View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_9 (Length: 575)
Name: NF10829A_low_9
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 89 - 569
Target Start/End: Complemental strand, 29158507 - 29158028
Alignment:
| Q |
89 |
tggtgtctaaacatcagcgttgtgtataaatagacccatatatagctaacttgaaaaggtacacatacatacataatagtaagagtgagagaaagtgaga |
188 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29158507 |
tggtgtctaaacatcagcgttgtatataaatagacccacatatagctagct-gaaaaggtacacatacatacataatagtaagagtgagagaaagtgaga |
29158409 |
T |
|
| Q |
189 |
aaaagatggtgataatgttgctgatgatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttga |
288 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29158408 |
aaaagatagtgataatggtgttgatgatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttga |
29158309 |
T |
|
| Q |
289 |
tgctcgtttcgatcgggcatccttcatcactcaactgctttccaatggtgaagctaataccaaatccacaacaacagcatgctgtgatttctgcccttgc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29158308 |
tgctcgtttcgatcgggcatccttcatcactcaactgctctccaatggtgaagctaataccaaatccacaacaacagcatgctgtgatttctgcccttgc |
29158209 |
T |
|
| Q |
389 |
acaagatcaatcccacctcaatgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaagttgcctttgcacaaggtcttttcctccacagt |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29158208 |
acaagatcaatcccacctcaatgtcagtgtactgatgttaaagaaaaatgtcactcagcttgcaaaagttgcctttgcacacggtcttttcctccacagt |
29158109 |
T |
|
| Q |
489 |
gtcgttgctatgatatcactaacttctgctatccatcatgtagttaattaactatgtaattaaccatgcatgtgatgtgag |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29158108 |
gtcgttgctatgatatcactaacttctgctatccatcatgtagttaattaactatgtaattaaccatgcatgtgatgtgag |
29158028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 181 - 520
Target Start/End: Complemental strand, 29207022 - 29206677
Alignment:
| Q |
181 |
aagtgagaaaaagatggtgataatgttgctgatgatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaacc |
280 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
29207022 |
aagtgagaaagagatagtgataatggatttgatgatgaacaagaaggcaatggtgatgaagttagctttgttggttttccttttgggcttcacttcaact |
29206923 |
T |
|
| Q |
281 |
atggttgatgctcgtttcgatcgggcatccttcatcactcaactgctttccaatggtgaagctaatacc------aaatccacaacaacagcatgctgtg |
374 |
Q |
| |
|
| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
29206922 |
gttgttgatgctcgtttcgacggatcatccttcatcactcaactgctctccaatggtgaagctacttacgaagtaaaatccacaacaacagcatgctgta |
29206823 |
T |
|
| Q |
375 |
atttctgcccttgcacaagatcaatcccacctcaatgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaagttgcctttgcacaaggtc |
474 |
Q |
| |
|
|| |||||||||||||| |||||| || ||||| ||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
29206822 |
atagctgcccttgcacaaaatcaattcctcctcagtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaagatgcctttgcacaagatc |
29206723 |
T |
|
| Q |
475 |
ttttcctccacagtgtcgttgctatgatatcactaacttctgctat |
520 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||| | ||||||||| |
|
|
| T |
29206722 |
ttttcctccacagtgccgttgcactgataccactgatttctgctat |
29206677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 29145110 - 29144943
Alignment:
| Q |
356 |
acaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaa |
455 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
29145110 |
acaacaacagcatgctgtgattcctgcccttgcacaaaatcaatccctcctcaatgccattgtactgatattggagaaacatgtcactcagcttgcaaaa |
29145011 |
T |
|
| Q |
456 |
gttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttctgctatcca |
523 |
Q |
| |
|
| || |||||||||| ||| ||||||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
29145010 |
gctgtctttgcacaaaatctattcctccacagtgtcactgcgctgatatcactgacttctgctatcca |
29144943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 232 - 568
Target Start/End: Complemental strand, 29162036 - 29161697
Alignment:
| Q |
232 |
gatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttcatcactcaactgctttcc |
331 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||| ||||||||||||| | ||||||||||||||||||| |||||||||| |||||| | | || |
|
|
| T |
29162036 |
gatgatgaagttagctttattggtttttcttttgggcttcacttcaactgttgttgatgctcgtttcgatccaacatccttcataactcaagtaatctca |
29161937 |
T |
|
| Q |
332 |
aatggtgaagct------aataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgt-cagtgtactgat |
424 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||| || ||||| |||||||||||| |||||| |||| |||||||||| |
|
|
| T |
29161936 |
aatggtgaagctgcttacgatgtcaaatccacaacaacaggatgctgtaatagctgccaatgcacaagatcattcccacaagcatgtgtggtgtactgat |
29161837 |
T |
|
| Q |
425 |
gttagagaaaaatgtcact---cagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttctgctatc |
521 |
Q |
| |
|
||||||||||||||| ||| ||| |||| | |||| ||||||||| || | ||||||||||||| |||||| ||||| |||||| ||||||||||| |
|
|
| T |
29161836 |
gttagagaaaaatgtaactcaccaggttgcttagattgcgtttgcacaaagtttattcctccacagtgccgttgccatgatgtcactaccttctgctatc |
29161737 |
T |
|
| Q |
522 |
catcatgtagttaattaactatgtaattaaccatgcatgtgatgtga |
568 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
29161736 |
---aatgtgattaattaactatg----taaccatgcatgtgatgtga |
29161697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 29153753 - 29153631
Alignment:
| Q |
217 |
gaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttcatc |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
29153753 |
gaacaagaaggcaatggtgatgaagttagctttgctggttttccttttgggcttcacttcaactgttgttgatgctcgtttcgattcaacatccttcata |
29153654 |
T |
|
| Q |
317 |
actcaactgctttccaatggtga |
339 |
Q |
| |
|
|||||| || | || |||||||| |
|
|
| T |
29153653 |
actcaagtgatctcaaatggtga |
29153631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 29145170 - 29145111
Alignment:
| Q |
233 |
atgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgct |
292 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29145170 |
atgatgaaattagctttgttggttttcctcttgagcttcacatcaaccatggttgatgct |
29145111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University