View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_92 (Length: 372)
Name: NF10829A_low_92
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 2964485 - 2964115
Alignment:
| Q |
1 |
aacacgctagctttctatgattctgataaacccgccatgataccaaacacaacgataggcaccatctctattttttgggaggagaaaataaaatcttcta |
100 |
Q |
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| T |
2964485 |
aacacgctagctttctatgattctgataaacccgccatgataccaaacacaacgataggcaccatctctattttttgggtggagaaaataaaatcttcta |
2964386 |
T |
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| Q |
101 |
tacttgggagtcaggctttacaaaccaagaaaaaatggctgcagctagaagtannnnnnnngttatacttttagtagttttgtgttcatttattaaacat |
200 |
Q |
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| T |
2964385 |
tacttgggagtcaggctttacaaaccaagaaaaaatggctgcagctagaagtattttttttgttatacttttagtagttttgtgttcatttattaaacat |
2964286 |
T |
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| Q |
201 |
tcatttcatgtgttaaattttctgagtaatgcattaatatttttccctctgtctatttatgtcaattttcagtgtaattgttgaagcgttgaaggtggac |
300 |
Q |
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| T |
2964285 |
tcatttcatgtgttaaattttctgagtaatgcattaatatttttccctctgtctatttatgtcaattttcagtgtaattgttgaagcgttgaaggtggac |
2964186 |
T |
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| Q |
301 |
agtctgcagaaactttgctcatcgctggagcctattctacgaagagttgtaagaaaattaagttgattgtg |
371 |
Q |
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| T |
2964185 |
agtctgcagaaactttgctcatcgctggagcctattctacgaagagttgtaagaaaattaagttgattgtg |
2964115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 35978267 - 35978356
Alignment:
| Q |
270 |
cagtgtaattgttgaagcgttgaaggtggacagtctgcagaaactttgctcatcgctggagcctattctacgaagagttgtaagaaaatt |
359 |
Q |
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| T |
35978267 |
cagtgtgattgttgaagccttgaaggtggatagtatgcagaaactgtgttcatcactggagcctattctacgcagagttgtaagaaaatt |
35978356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 53507872 - 53507788
Alignment:
| Q |
270 |
cagtgtaattgttgaagcgttgaaggtggacagtctgcagaaactttgctcatcgctggagcctattctacgaagagttgtaaga |
354 |
Q |
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|||||||||||||||||| | |||||||||||| ||||||| ||||||||||| | || |||||||| || |||||||||||| |
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| T |
53507872 |
cagtgtaattgttgaagctctcaaggtggacagtttgcagaagctttgctcatctttagaacctattcttcgtagagttgtaaga |
53507788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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