View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_95 (Length: 371)
Name: NF10829A_low_95
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 48290906 - 48290561
Alignment:
| Q |
18 |
atttctctccttttattggccaaaattgatgaaattaattaaatgtgaagaaggtttgagaaaacagaaaattaaagaggtagatgttgataataagaaa |
117 |
Q |
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| T |
48290906 |
atttctctccttttattggtcaaaattgatgaaattaattaaatgtgaagaaggtttgagaaaacagaaaattaaagaggtagatgttgataataagaaa |
48290807 |
T |
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| Q |
118 |
tataagaagcgttcaaagcttgcaatgagtggtgtaaatggaaagggacatgaagaaagagatgtagcatctttaatctagttataattaatagtaaatt |
217 |
Q |
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| T |
48290806 |
tataagaagcgttcaaagcttgcaatgagtggtgtaaatggaaagggacatgaagaaagagatgtagcatctttaatctagttataattaatagtaaatt |
48290707 |
T |
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| Q |
218 |
gattatagcttagcttgcaaaaatcacaattagccaacactactgccttttttggttgataatgtctaaacttttagggcatttcatttcatttaattga |
317 |
Q |
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| T |
48290706 |
gattatagcttagcttgcaaaaatcacaattagccaacactactgccttttttggttgataatgtctaaacttttagggcatttcatttcatttaattga |
48290607 |
T |
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| Q |
318 |
taacatcaaccactgtatttgctttcatcaacgttagctcattcat |
363 |
Q |
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| T |
48290606 |
taacatcaaccactgtaattgctttcatcaacgttagctcattcat |
48290561 |
T |
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