View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_97 (Length: 368)
Name: NF10829A_low_97
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 12122495 - 12122859
Alignment:
| Q |
1 |
agaaagcaagttcgttggaacctcgttcgtcgccttgaggaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttg |
100 |
Q |
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| T |
12122495 |
agaaagcaagttcgttggaacctcgttcgtcgccttgaagaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttg |
12122594 |
T |
|
| Q |
101 |
gtgaccggcaacttgatgctccgggattttcagcttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagc |
200 |
Q |
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| T |
12122595 |
gtgaccggcaacttgatgctccgggattttcagcttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagc |
12122694 |
T |
|
| Q |
201 |
tattaaacatatgaaatcaagaattatatgaaaagggaagagaaaaaccagaaaatgataagctgggagaggggaaacacgtgagatagaggacagacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122695 |
tattaaacatatgaaatcaagaattatatgaaaagggaagagaaaaaccagaaaatgataagctgggagaggggaaacacgtgagatagaggacagacta |
12122794 |
T |
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| Q |
301 |
tcaaaatagagggacataatgaagattactttagacagaatccataaaaccaataacaccaaact |
365 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12122795 |
tcaaaatagagagacataatgaagattactttagacagaatccataaaaccaataacaccgaact |
12122859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 14692014 - 14692210
Alignment:
| Q |
1 |
agaaagcaagttcgttggaacctcgttcgtcgccttgaggaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttg |
100 |
Q |
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||||||||||||| |||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||| |
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| T |
14692014 |
agaaagcaagttcattggaacctcgttcatcgtcttgaagaggtttgtagaactttccagaatcgtctattagaggacctaggattccgttttttgcttg |
14692113 |
T |
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| Q |
101 |
gtgaccggcaacttgatgctccgggattttcagcttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaa |
197 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
14692114 |
gtgacctgcaacttggtgctctgggattttcagcttcaccattttgttactgaagctgtatccattgaacacaaataacaacaaaaattgtcaaaaa |
14692210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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