View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_98 (Length: 367)

Name: NF10829A_low_98
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_98
NF10829A_low_98
[»] chr3 (7 HSPs)
chr3 (198-352)||(17943826-17943980)
chr3 (19-101)||(17944103-17944185)
chr3 (229-295)||(19466264-19466330)
chr3 (229-298)||(18148709-18148778)
chr3 (198-298)||(18117622-18117722)
chr3 (253-300)||(17725508-17725555)
chr3 (253-300)||(19026737-19026784)
[»] chr6 (1 HSPs)
chr6 (25-59)||(13664090-13664124)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 17943980 - 17943826
Alignment:
Q  198 gtaatgcaaatcaaatataatatggcatctagctataatgtaaagttgaaaacaccaaagtttcaacacaaactcttattctgcaattatctgcataaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||||||||||     
T  17943980 gtaatgcaaatcaaatataatatggcatctagctataatgtaaaattgaaagcaccaaagtttgcacacaaactcttattctgcaactatctgcataaag 17943881  T
Q  298 tgatacataaactaataaaaataagagagatacgtaacataagaaacactgtcca 352  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  17943880 tgatacataaactaataaaaagaagagagatacataacataagcaacactgtcca 17943826  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 17944185 - 17944103
Alignment:
Q  19 aaaatgcagggaagacttcagtattttctttacaaatatgtatattattagaacttgttaactttaagcatttgttatcatat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  17944185 aaaatgcagggaagacttcagtattttctttacaaatatgtatattgttagaatttgttaactttaagcatttgttatcatat 17944103  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 19466330 - 19466264
Alignment:
Q  229 gctataatgtaaagttgaaaacaccaaagtttcaacacaaactcttattctgcaattatctgcataa 295  Q
    ||||||||||||| || ||| || ||||||||| ||||||||||||||||||||| |||||||||||    
T  19466330 gctataatgtaaaattaaaagcagcaaagtttctacacaaactcttattctgcaactatctgcataa 19466264  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 18148778 - 18148709
Alignment:
Q  229 gctataatgtaaagttgaaaacaccaaagtttcaacacaaactcttattctgcaattatctgcataaact 298  Q
    |||||||||| || || ||| || |||| |||| ||||||||||||||||||||| ||||||||||||||    
T  18148778 gctataatgtgaaattaaaagcagcaaaatttctacacaaactcttattctgcaactatctgcataaact 18148709  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 18117722 - 18117622
Alignment:
Q  198 gtaatgcaaatcaaatataatatggcatctagctataatgtaaagttgaaaacaccaaagtttcaacacaaactcttattctgcaattatctgcataaac 297  Q
    |||||| ||||||||| | |||||| || ||||||||||||||| ||  || || |||||||||  |||||  ||||||||||||| |||| ||||||||    
T  18117722 gtaatgaaaatcaaatttcatatgggatttagctataatgtaaaattataagcaacaaagtttctgcacaatttcttattctgcaactatccgcataaac 18117623  T
Q  298 t 298  Q
    |    
T  18117622 t 18117622  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 17725508 - 17725555
Alignment:
Q  253 caaagtttcaacacaaactcttattctgcaattatctgcataaactga 300  Q
    ||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  17725508 caaagtttctacacaaactcttattctacaaccatctgcataaactga 17725555  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 19026737 - 19026784
Alignment:
Q  253 caaagtttcaacacaaactcttattctgcaattatctgcataaactga 300  Q
    ||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  19026737 caaagtttctacacaaactcttattctacaaccatctgcataaactga 19026784  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 13664090 - 13664124
Alignment:
Q  25 cagggaagacttcagtattttctttacaaatatgt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  13664090 cagggaagacttcagtattttctttacaaatatgt 13664124  T

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