View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829_high_1 (Length: 311)
Name: NF10829_high_1
Description: NF10829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 5834994 - 5834709
Alignment:
| Q |
16 |
atataagtacagaagtttggtatagtggtaaaaatacaacatcaatttgaggtatcatattccaccaccataaatttatcgtataaaacacaatattaat |
115 |
Q |
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| T |
5834994 |
atataagtacaaaagtttggtatagtggtaaaaatacaacatcaaattgaggtatcatattccaccaccataaatttatcgtataaaacacaatattaat |
5834895 |
T |
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| Q |
116 |
ttgttagtttttcttctatggcaaatctctttcactagacatcaacattttaaacacgtcaagacttatgtgattatttatttaataaaaataaatgcta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5834894 |
ttgttagtttttcttctatggcaaatctctttcactagacatcaacattttaaacacgtcaagacttatgtgattatgtatttaataaaaataaatgct- |
5834796 |
T |
|
| Q |
216 |
aatataatgagtttctccatcacgtacgttcacgtctttctttgtgtgctaaataaaaacattaattgcctaccatgcatacattct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5834795 |
aatataatgagtttctccatcacgtacgttcacgtctttctttgtgtgctaaataaaaacattaattgcctaccatacatacattct |
5834709 |
T |
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