View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10830_low_2 (Length: 283)
Name: NF10830_low_2
Description: NF10830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10830_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 13248234 - 13247979
Alignment:
| Q |
19 |
cctttatcatgcttttagttttattgaacgtatcaaggatgatcaaaaaatgcatagcttctctcaacaattctaagattgcattgaatgatgtattgct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13248234 |
cctttatcatgcttttagttttattgaacgtatcagggatgatcaaaaaatgcatagcttctctcaacaattttaagattgcattgaatgatgtattgct |
13248135 |
T |
|
| Q |
119 |
ccaaccataaagacatttcaataaatatagccgaatgatgaacgaaaatttagagaattttttgcaacccggataaaactcttgtttggattcttgacta |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13248134 |
ccaaccataaagacacttcaataaatatagccgaatgatgaacgaaaatttagagaattttttgcaacccggataaaactcttgtttggattcttgacta |
13248035 |
T |
|
| Q |
219 |
tattatggaaattttttgcatcttcgttggggccttcattaactatgtattcttct |
274 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13248034 |
tattatggaacttttttgcatcttcgttggggccttcattaactttgtattcttct |
13247979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 19307797 - 19307541
Alignment:
| Q |
19 |
cctttatcatgcttttagttttattgaacgtatcaaggatgatcaaaaaatgcatagcttctctcaacaattctaagattgcattgaatgatgtattgct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
19307797 |
cctttatcatgcttttagttttattgaacgtatcagggatgttcaaaaaaggcatagcttctctcaacaactctaagagtgcattgaatgatgtattgct |
19307698 |
T |
|
| Q |
119 |
ccaaccataaagacatttcaataaatatagccgaatgatgaacgaaaatttagagaattttttgcaacccggataaaactcttgtttggattctt-gact |
217 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||| || | |
|
|
| T |
19307697 |
ccaaccataaagacacttaaataaatatagccgaatgatgaacgacaatttagagaatgttttgcaacccggatacaactcttgttgggattcttcgatt |
19307598 |
T |
|
| Q |
218 |
atattatggaaattttttgcatcttcgttggggccttcattaactatgtattcttct |
274 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19307597 |
agattataaaacttttttgcatcttcgttggggccttcattaactctgtattcttct |
19307541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 21228175 - 21228106
Alignment:
| Q |
70 |
gcatagcttctctcaacaattctaagattgcattgaatgatgtattgctccaaccataaagacatttcaa |
139 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
21228175 |
gcatagcctctttcaacaattctaagagagcagtgaatgatgcattgctccatccatggaggcatttcaa |
21228106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 32809282 - 32809414
Alignment:
| Q |
70 |
gcatagcttctctcaacaattctaagattgcattgaatgatgtattgctccaaccataaagacatttcaataaatatagccgaatgatgaacgaaaattt |
169 |
Q |
| |
|
||||||||||| ||||||| ||||| | | | | || |||| |||||||||||||| |||||| ||||| || || || ||||| |||| || ||| | |
|
|
| T |
32809282 |
gcatagcttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacagacgaatagtgaaagataatgt |
32809381 |
T |
|
| Q |
170 |
agagaattttttgcaacccggataaaactcttg |
202 |
Q |
| |
|
|||||| |||||||| || || || |||||||| |
|
|
| T |
32809382 |
agagaaatttttgcatcctgggtacaactcttg |
32809414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 9824452 - 9824521
Alignment:
| Q |
70 |
gcatagcttctctcaacaattctaagattgcattgaatgatgtattgctccaaccataaagacatttcaa |
139 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
9824452 |
gcatagcctctttcaacaattctaagagagcagtgaatgatgcattgctccatccatggaggcatttcaa |
9824521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 18447868 - 18447799
Alignment:
| Q |
70 |
gcatagcttctctcaacaattctaagattgcattgaatgatgtattgctccaaccataaagacatttcaa |
139 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
18447868 |
gcatagcctctttcaacaattctaagagagcagtgaatgatgcattgctccatccatggaggcatttcaa |
18447799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University