View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_high_20 (Length: 312)

Name: NF10831_high_20
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_high_20
NF10831_high_20
[»] chr4 (2 HSPs)
chr4 (13-301)||(44933757-44934045)
chr4 (41-306)||(46604478-46604743)
[»] chr3 (2 HSPs)
chr3 (41-306)||(38825548-38825813)
chr3 (45-306)||(11525018-11525279)
[»] chr1 (1 HSPs)
chr1 (41-306)||(17881511-17881776)
[»] chr7 (2 HSPs)
chr7 (117-203)||(26083091-26083177)
chr7 (117-203)||(26106878-26106964)
[»] chr6 (3 HSPs)
chr6 (117-203)||(4502475-4502561)
chr6 (117-203)||(15826027-15826113)
chr6 (117-178)||(34312021-34312082)
[»] chr5 (2 HSPs)
chr5 (117-203)||(548680-548766)
chr5 (117-203)||(30279092-30279178)
[»] scaffold1049 (1 HSPs)
scaffold1049 (117-178)||(232-293)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 44933757 - 44934045
Alignment:
Q  13 atcaataaattcaatttcttcaaattatttggctagtttatcatgtgagattcaatggcttcattacctccttgttgacctatacattcctatcagatct 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44933757 atcaataaattcaatttcttcaaattatttggctagtttatcctgtgagattcaatggcttcattacctccttgttgacctatacattcctatcagatct 44933856  T
Q  113 ccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgattaccatgtga 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |    
T  44933857 ccttcttcagtttattgtgacaatgcatcagcgatttatcttgctcataatcctacctttcatgagtgtataaagcatattgagattgattaccatgtaa 44933956  T
Q  213 ttagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttcat 301  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  44933957 ttagagaaaagattcaaaagggcaccattcacctcttatcagttccatcatcacctcaacttgctgatgtatttactaaaccccttcat 44934045  T

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Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 41 - 306
Target Start/End: Original strand, 46604478 - 46604743
Alignment:
Q  41 ttggctagtttatcatgtgagattcaatggcttcattacctccttgttgacctatacattcctatcagatctccttcttcagtttattgtgacaatgcat 140  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  46604478 ttggctagtttatcatgtgagattcaatggcttcattacctacttgctgacctatacattcctatcaaatctccatcttcagtttattgtgacaatgcat 46604577  T
Q  141 cagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgattaccatgtgattagagaaaagattcaaaagggcaccat 240  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  46604578 cagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatagattgccatgtaattagagaaaagattcaaaagggcaccat 46604677  T
Q  241 tcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttcatctcac 306  Q
    |||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |||||| ||||    
T  46604678 tcacctattaccagttccatcatcatctcaacttgctgatgtatttactaaaccgcttcatgtcac 46604743  T

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Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 41 - 306
Target Start/End: Original strand, 38825548 - 38825813
Alignment:
Q  41 ttggctagtttatcatgtgagattcaatggcttcattacctccttgttgacctatacattcctatcagatctccttcttcagtttattgtgacaatgcat 140  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  38825548 ttggctagtttatcatgtgagattcaatggcttcattacctacttgctgacctatacattcctatcaaatctccatcttcagtttattgtgacaatgcat 38825647  T
Q  141 cagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgattaccatgtgattagagaaaagattcaaaagggcaccat 240  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  38825648 cagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatagattgccatgtaattagagaaaagattcaaaagggcaccat 38825747  T
Q  241 tcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttcatctcac 306  Q
    |||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |||||| ||||    
T  38825748 tcacctattaccagttccatcatcatctcaacttgctgatgtatttactaaaccgcttcatgtcac 38825813  T

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Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 45 - 306
Target Start/End: Original strand, 11525018 - 11525279
Alignment:
Q  45 ctagtttatcatgtgagattcaatggcttcattacctccttgttgacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagc 144  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| |    
T  11525018 ctagtttatcatgtgagattcaatggcttcattacctacttgctgacctatacattcctttcaaatctccgtcttcagtttattgtgataatgcatcaac 11525117  T
Q  145 aatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgattaccatgtgattagagaaaagattcaaaagggcaccattcac 244  Q
    |||||||||||||||||| ||||| |||||||||| || ||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||     
T  11525118 aatttatcttgctcataaccctacttttcatgagcgtacaaaacacattgagaatgatttccatgtgattagagaaaagattcaaaagggcaccattcaa 11525217  T
Q  245 ctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttcatctcac 306  Q
    || |||||||||||||||||| | ||||||| |||||||||||| ||||| |||||| ||||    
T  11525218 ctattaccagttccatcatcatctcaacttgctgatgtatttaccaaaccgcttcatgtcac 11525279  T

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Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 41 - 306
Target Start/End: Complemental strand, 17881776 - 17881511
Alignment:
Q  41 ttggctagtttatcatgtgagattcaatggcttcattacctccttgttgacctatacattcctatcagatctccttcttcagtttattgtgacaatgcat 140  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  17881776 ttggctagtttatcatgtgagattcaatggcttcattacctacttgctgacctatacattcctatcaaatctccatcttcagtttattgtgacaatgcat 17881677  T
Q  141 cagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgattaccatgtgattagagaaaagattcaaaagggcaccat 240  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  17881676 cagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatagattgccatgtaattagagaaaagattcaaaagggcaccat 17881577  T
Q  241 tcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttcatctcac 306  Q
    |||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |||||| ||||    
T  17881576 tcacctattaccagttccatcatcatctcaacttgctgatgtatttactaaaccgcttcatgtcac 17881511  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 26083177 - 26083091
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 203  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  26083177 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 26083091  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 26106964 - 26106878
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 203  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  26106964 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 26106878  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 4502475 - 4502561
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 203  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  4502475 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 4502561  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 15826027 - 15826113
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 203  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  15826027 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 15826113  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 34312021 - 34312082
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgag 178  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||    
T  34312021 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgag 34312082  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 548766 - 548680
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 203  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  548766 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 548680  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 30279178 - 30279092
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 203  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  30279178 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 30279092  T

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Target: scaffold1049 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 293 - 232
Alignment:
Q  117 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgag 178  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||    
T  293 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgag 232  T

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