View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_high_21 (Length: 304)

Name: NF10831_high_21
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_high_21
NF10831_high_21
[»] chr1 (2 HSPs)
chr1 (134-283)||(51047960-51048111)
chr1 (18-73)||(51047843-51047899)
[»] chr2 (4 HSPs)
chr2 (134-269)||(1775697-1775829)
chr2 (18-73)||(1775894-1775950)
chr2 (236-283)||(42578451-42578498)
chr2 (243-283)||(28634546-28634586)
[»] chr8 (3 HSPs)
chr8 (236-283)||(38783622-38783669)
chr8 (228-283)||(37513234-37513289)
chr8 (243-283)||(31289160-31289198)
[»] chr5 (4 HSPs)
chr5 (219-269)||(26077962-26078012)
chr5 (236-283)||(233543-233590)
chr5 (236-283)||(33656785-33656832)
chr5 (229-283)||(7440949-7441003)
[»] chr6 (1 HSPs)
chr6 (230-283)||(10365065-10365118)
[»] chr3 (3 HSPs)
chr3 (228-283)||(39692509-39692564)
chr3 (237-282)||(37324905-37324950)
chr3 (231-283)||(20497295-20497347)
[»] scaffold0031 (1 HSPs)
scaffold0031 (134-179)||(105759-105805)
[»] chr7 (1 HSPs)
chr7 (235-283)||(40091131-40091179)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 51047960 - 51048111
Alignment:
Q  134 ctaactattttgtaccaaaaaacttaatttaattatttaagctattcaacatttnnnnnnnnn--caaatcaaatctagaattaatcatttttgtactca 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  51047960 ctaactattttgtacaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaaaaaacaaatcaaatctagaattaatcatttttgtactca 51048059  T
Q  232 aggatatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  51048060 aggatatttttgtacttttagatataatcaacacttctctcttctctatttc 51048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 51047843 - 51047899
Alignment:
Q  18 gttagcaatggttatggaaggagataag-aactaagaaagggaaagatgttcgcttc 73  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51047843 gttagcaatggttatggaaggagataagaaactaagaaagggaaagatgttcgcttc 51047899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 269
Target Start/End: Complemental strand, 1775829 - 1775697
Alignment:
Q  134 ctaactattttgtaccaaaaaa-cttaatttaattatttaagctattcaacatttnnnnnnnnncaaatcaaatctagaattaatcatttttgtactcaa 232  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| || ||||    
T  1775829 ctaactattttgaaccaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaa---aaatcaaatctagaattaatcattttt-tattcaa 1775734  T
Q  233 ggatatttttgtacttttagatataatcaacacttct 269  Q
    |||||||||||||||||||||||||||||||||||||    
T  1775733 ggatatttttgtacttttagatataatcaacacttct 1775697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 1775950 - 1775894
Alignment:
Q  18 gttagcaatggttatggaaggagataagaa-ctaagaaagggaaagatgttcgcttc 73  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  1775950 gttagcaatggttatggaagtagataagaaactaagaaagggaaagatgttcgcttc 1775894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 42578451 - 42578498
Alignment:
Q  236 tatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  42578451 tatttttgtacttttagatataatcaaaacttctctcttctctatttc 42578498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 28634586 - 28634546
Alignment:
Q  243 gtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  28634586 gtacttttagatataatcaacacttctctctcttctatttc 28634546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 38783622 - 38783669
Alignment:
Q  236 tatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  38783622 tatttttgtacttttagatataatcaacacttctctcttctctatttc 38783669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 37513234 - 37513289
Alignment:
Q  228 ctcaaggatatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    |||||||| ||||||||||||| | | ||||||||||||||| |||| ||||||||    
T  37513234 ctcaaggacatttttgtactttcaaaaataatcaacacttctctcttctctatttc 37513289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 31289160 - 31289198
Alignment:
Q  243 gtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  31289160 gtacttttagatataatcaacacttc--tcttttctatttc 31289198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 26077962 - 26078012
Alignment:
Q  219 atttttgtactcaaggatatttttgtacttttagatataatcaacacttct 269  Q
    |||||| | ||||||| ||||||||||||||||||||||||||| ||||||    
T  26077962 attttttttctcaagggtatttttgtacttttagatataatcaaaacttct 26078012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 233590 - 233543
Alignment:
Q  236 tatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||||||||||||||||||||||||| | |||| |||| ||||||||    
T  233590 tatttttgtacttttagatataatcaaaatttctctcttctctatttc 233543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 33656832 - 33656785
Alignment:
Q  236 tatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||||||||||||||||||||||||| |||| | |||| ||||||||    
T  33656832 tatttttgtacttttagatataatcaaaacttatctcttctctatttc 33656785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 7440949 - 7441003
Alignment:
Q  229 tcaaggatatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||||||||||||||||||||| | ||||| |||| |||| |||| ||||||||    
T  7440949 tcaaggatatttttgtacttttaaaaataattaacaattctctcttctctatttc 7441003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 10365118 - 10365065
Alignment:
Q  230 caaggatatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||    
T  10365118 caagggtatttttgtacttttatgtataatcaacacttctctcttctctatttc 10365065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 39692509 - 39692564
Alignment:
Q  228 ctcaaggatatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    |||||||| ||||||||||||| | | ||||||||||||||| |||| ||||||||    
T  39692509 ctcaaggacatttttgtactttcaaaaataatcaacacttctctcttctctatttc 39692564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 37324950 - 37324905
Alignment:
Q  237 atttttgtacttttagatataatcaacacttctatcttttctattt 282  Q
    ||||||||||||||| | ||||||||||||||| ||| ||||||||    
T  37324950 atttttgtacttttaaaaataatcaacacttctctctcttctattt 37324905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 20497295 - 20497347
Alignment:
Q  231 aaggatatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| ||||||||    
T  20497295 aagggtatttttgtacttttcaatataatcaactcttctctcttctctatttc 20497347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 105805 - 105759
Alignment:
Q  134 ctaactattttgtaccaaaaaa-cttaatttaattatttaagctatt 179  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  105805 ctaattattttgtatcaaaaaaacttaatttaattatttaagctatt 105759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 40091179 - 40091131
Alignment:
Q  235 atatttttgtacttttagatataatcaacacttctatcttttctatttc 283  Q
    |||||||||||||||| ||||||||||| |||||| ||||  |||||||    
T  40091179 atatttttgtactttttgatataatcaaaacttctctcttcactatttc 40091131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University