View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_high_23 (Length: 300)

Name: NF10831_high_23
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_high_23
NF10831_high_23
[»] chr4 (1 HSPs)
chr4 (24-280)||(21611600-21611856)
[»] chr2 (1 HSPs)
chr2 (24-280)||(40513406-40513662)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 280
Target Start/End: Original strand, 21611600 - 21611856
Alignment:
Q  24 tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21611600 tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc 21611699  T
Q  124 aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21611700 aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt 21611799  T
Q  224 ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagagga 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21611800 ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagagga 21611856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 40513662 - 40513406
Alignment:
Q  24 tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc 123  Q
    |||| |||||||||||||||  ||| || |  ||||||||||| || || |||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  40513662 tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc 40513563  T
Q  124 aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt 223  Q
    | | |||  ||| ||||| |||||||||||||||| | |  |||||||| | |||| | || |||||||| |||  ||  | |||||| |  |||| |||    
T  40513562 agtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatt 40513463  T
Q  224 ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagagga 280  Q
    |  |||| ||||| ||| || |||||||| |||||||| | ||||||||| ||||||    
T  40513462 tgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagagga 40513406  T

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