View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10831_high_27 (Length: 276)
Name: NF10831_high_27
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_high_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 7903002 - 7902820
Alignment:
| Q |
15 |
agtatcaacataagtaaagtcatgcaaatcagaactcaagacatatgaccattatcctgtactcaaataatagaaaactttggtatttctgtgggagcag |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7903002 |
agtattaacataagtaaagtcatgcaaatcagaactca-gacatatgaccattatcctgtactcaaataatagaaaactttggtatttctgtgggagcag |
7902904 |
T |
|
| Q |
115 |
gggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttgtttgcacctcctgagggctgcta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
7902903 |
gggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttggttgcacctcctgagggcagcta |
7902820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 74 - 225
Target Start/End: Complemental strand, 7913366 - 7913210
Alignment:
| Q |
74 |
tactcaaataatagaaaactttggtatttctgtgg-----gagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagct |
168 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913366 |
tactcaaataatagaaaacttgggtatttttgtaggagcagagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagct |
7913267 |
T |
|
| Q |
169 |
tcatttgtttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
225 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913266 |
tcatttggttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
7913210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 7896435 - 7896323
Alignment:
| Q |
110 |
agcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttgtttgcacctcctgagggctgctagagcatcagac |
209 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| |||| || |||| ||| |||||| |
|
|
| T |
7896435 |
agcaggagtaaccaaacttgttccaacaagctcaatttgcaatgtctttccatcaagcttcatattgttgtacctcttgagagcggctaaagcctcagac |
7896336 |
T |
|
| Q |
210 |
tccctagtaaaga |
222 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
7896335 |
tgccttgtaaaga |
7896323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 7913448 - 7913384
Alignment:
| Q |
15 |
agtatcaacataagtaaagtcatgcaaatcagaactcaagacatatgaccattatcctgtactcaa |
80 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
7913448 |
agtattaacataagtaaagtcatgcaaatcagaactc-ggacatatgatcattatcctgtattcaa |
7913384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University