View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_high_29 (Length: 260)
Name: NF10831_high_29
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_high_29 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 1696050 - 1696126
Alignment:
| Q |
184 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattga |
260 |
Q |
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| T |
1696050 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattga |
1696126 |
T |
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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 1695909 - 1695981
Alignment:
| Q |
52 |
gtgataaactatgattatgtcagactaatcgttgatctaaatatagctggtatactaaggttgattctttcat |
124 |
Q |
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| T |
1695909 |
gtgataaactatgattatgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcat |
1695981 |
T |
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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 1685520 - 1685575
Alignment:
| Q |
203 |
tatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaatt |
258 |
Q |
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| T |
1685520 |
tatattcacgtaaacaacaaaacaaagtaataaatagagaaagagagagtttaatt |
1685575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 1685404 - 1685447
Alignment:
| Q |
79 |
atcgttgatctaaatatagctggtatactaaggttgattctttc |
122 |
Q |
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| T |
1685404 |
atcgttgatctaaatatagctggtatacttaggttgattctttc |
1685447 |
T |
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