View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10831_high_3 (Length: 470)
Name: NF10831_high_3
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 30768330 - 30768770
Alignment:
| Q |
20 |
ccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768330 |
ccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcga |
30768429 |
T |
|
| Q |
120 |
ggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768430 |
ggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcc |
30768529 |
T |
|
| Q |
220 |
tcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtggggttggttttgggcttattgatgaggatattgataatgagtg |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768530 |
tcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtggggttggttttgggcttattgatgaggatattgataatgagtg |
30768629 |
T |
|
| Q |
320 |
tgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaacta |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768630 |
tgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaacta |
30768729 |
T |
|
| Q |
420 |
ataaagtttaagtgttgttgttatgattcatgtgccctttg |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768730 |
ataaagtttaagtgttgttgttatgattcatgtgccctttg |
30768770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 39077304 - 39077495
Alignment:
| Q |
20 |
ccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcga |
119 |
Q |
| |
|
|||||| || ||||| || ||||||||||||||||| || ||||||||||| ||||||| || |||||||||||||| | |||||| | ||||| ||| |
|
|
| T |
39077304 |
ccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacga |
39077403 |
T |
|
| Q |
120 |
ggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctcc |
211 |
Q |
| |
|
|||||||| | ||||| ||||| || || | |||||| |||| || || | || ||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
39077404 |
ggacctttcgcagtgtataccttactatgtctgtcttttctacctgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcc |
39077495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 22328083 - 22327946
Alignment:
| Q |
20 |
ccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcga |
119 |
Q |
| |
|
|||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| || | ||| || || |
|
|
| T |
22328083 |
ccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacgg |
22327984 |
T |
|
| Q |
120 |
ggaccttttgatgtgtaaaccttgctgtgacgatcttt |
157 |
Q |
| |
|
|||||||| | ||| |||| || |||||||| ||||| |
|
|
| T |
22327983 |
ggacctttcgcggtgcaaactttactgtgacggtcttt |
22327946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
360 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
410 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University