View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10831_high_34 (Length: 253)
Name: NF10831_high_34
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_high_34 |
 | |
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| [»] chr8 (5 HSPs) |
| |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43539368 - 43539120
Alignment:
| Q |
1 |
atctttaaacccaaaagaataacatctttatgaagatagagatgaatattcttttttctggnnnnnnnnnnnatcatgaataagaaatannnnnnnnact |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
43539368 |
atctttaaacccaaaagaataaaatctttatgaagatagagatgaatattcttttttctggtttttt-----atcatgaataagaaatattttttttact |
43539274 |
T |
|
| Q |
101 |
ttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactattttg |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
43539273 |
ttcaatttggtccctataattgacacatcggtagttaacagaattttttaacggtaaggattaaactgataacagatatacacattcagggactattttg |
43539174 |
T |
|
| Q |
200 |
tagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggacc |
253 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43539173 |
tagtttatcctgagtcggggactaaagtgacagcgaggtgcaaagttagggacc |
43539120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 43539752 - 43539908
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt |
196 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| || ||||| | ||||||| |||||||||||||||||||||| || | ||||||| |||||||| |
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|
| T |
43539752 |
actttcaatttggtccctatgattgacacatcatgagttaacataggtttttaacggtaaggactaaactgataacagatgtgcatattcaaggactatt |
43539851 |
T |
|
| Q |
197 |
ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggacc |
253 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
43539852 |
ttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaagtcagggacc |
43539908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 59723 - 59568
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaag-gtaaggactaaactgataacaaatatatatattcagggactatt |
196 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| | ||||| |||||||||| ||||||||||||||||| ||| || || |||||||||||||| |
|
|
| T |
59723 |
actttcaatttggtccctatgattgacacatcatcggttaacataattttttaattgtaaggactaaactgatgacagatctacccattcagggactatt |
59624 |
T |
|
| Q |
197 |
ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggac |
252 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
59623 |
ttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggac |
59568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 35675785 - 35675635
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt |
196 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| | |||||||| ||||||| |||||||| | ||||||||||| || || ||||||| || |||| |
|
|
| T |
35675785 |
acttttaatttggtctctataattgacacatcatcaattaacagaaatttttaacggtaaggattgaactgataacagatgtacatattcaaagaatatt |
35675686 |
T |
|
| Q |
197 |
ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtca |
247 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
35675685 |
ttgtagtttatcctaagttgaggactaaagtgatagcgaggtgcaaagtca |
35675635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 60168 - 60312
Alignment:
| Q |
100 |
tttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatttt |
198 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||| | || | |||||||||||||| | |
|
|
| T |
60168 |
tttcaatttggtccctatgaatgacacatcagcagttaacagaaatttttaaaggtaaagactagactgataacaggtctacacattcagggactattct |
60267 |
T |
|
| Q |
199 |
gtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtca |
247 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
60268 |
gtagtttatcctga----gggaccaaagtgacaacgaggtgcaaagtca |
60312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 29980102 - 29980352
Alignment:
| Q |
1 |
atctttaaacccaaaagaataacatctttatgaagatagagatgaatattcttttttctggnnnnnnnnnnn-atcatgaataagaaatannnnnnnnac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
29980102 |
atctttaaacccaaaagaataacatctttatgaagatagagatgaatattctttttttttttggtttttttttatcatgaataagaaatattttttttac |
29980201 |
T |
|
| Q |
100 |
tttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatttt |
198 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29980202 |
tttcagattggttcctataattgacacataagtaggtaacagaattttttaacggtaaagactaaactgataacaaatatacacattcagggactatttt |
29980301 |
T |
|
| Q |
199 |
gtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg |
249 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29980302 |
gtagtttatcttgagttggggactaaagtgacagcgaggtgtaaagtcagg |
29980352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 29979007 - 29978853
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt |
196 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||| || ||||| || ||||||| |||||||| |||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
29979007 |
actttcaatttggtccctctaattaacacatcgtgagttaacaaaaatttttaacggtaaggattaaactgataacaaatgtatattttcagagactatt |
29978908 |
T |
|
| Q |
197 |
tt-gtagtttatcctgagttgggg-actaaagtgacagcgaggtgtaaagtcagg |
249 |
Q |
| |
|
|| ||| || ||| | ||| |||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
29978907 |
ttggtatttaatcataagtcggggaactaaagtgacaacgaagtgtaaagtcagg |
29978853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 39268803 - 39268954
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaaggtaaggactaaactgataacaaatatatatattcagggactattt |
197 |
Q |
| |
|
|||||||||||||| | || |||||||||||| | |||||||| ||||| | ||||| ||||||||||||||| | ||| | |||||| ||| | | |
|
|
| T |
39268803 |
actttcaatttggtccttaggattgacacatcaccatgtaacagagtttttaacggtaaaaactaaactgataacagagatacacgttcaggaactttat |
39268902 |
T |
|
| Q |
198 |
tgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg |
249 |
Q |
| |
|
|||| ||||| | |||| || |||||||||||||||||| |||||| ||||| |
|
|
| T |
39268903 |
tgtattttattcagagtcggagactaaagtgacagcgagatgtaaaatcagg |
39268954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 39267837 - 39267740
Alignment:
| Q |
152 |
ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg |
249 |
Q |
| |
|
|||||||||||||||||||||| || || | ||||||| ||| | ||||| |||||||| | | || |||| |||||||||||||||| ||||||||| |
|
|
| T |
39267837 |
ggtaaggactaaactgataacagatgtacacattcaggcactttattgtattttatcctcaatcggcgactgaagtgacagcgaggtgcaaagtcagg |
39267740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39268258 - 39268303
Alignment:
| Q |
1 |
atctttaaacccaaaagaataacatctttatgaagatagagatgaa |
46 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
39268258 |
atctttaaacccaaaagaacaacatcttcatgaagatggagatgaa |
39268303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 26652595 - 26652712
Alignment:
| Q |
136 |
taacagaattttttaaggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcga |
235 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| | ||| | ||||| ||||||||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
26652595 |
taacagaatttttaacagtaaggactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcga |
26652694 |
T |
|
| Q |
236 |
ggtgtaaagtcagggacc |
253 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
26652695 |
gatgcaaagtcagggacc |
26652712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 27823900 - 27823786
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt |
196 |
Q |
| |
|
|||||||||||| | | |||||||||||||||| | |||||||| ||||||| |||||| ||||||| ||||||| | ||| | ||||| |||| | |
|
|
| T |
27823900 |
actttcaatttgatccttataattgacacatcaccatttaacagaagtttttaacggtaagaactaaaccgataacagagatagacattcaaagacttta |
27823801 |
T |
|
| Q |
197 |
ttgtagtttatcctg |
211 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
27823800 |
ttgtattttatcctg |
27823786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 8484158 - 8484314
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt |
196 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| | | |||||||| |||||| |||||| |||||||||||||||||| || | ||||| |||||||| |
|
|
| T |
8484158 |
actttcaatttagtccctatgattgacacatctgcggttaacagaaaattttaacggtaagtactaaactgataacaaatttacacattcatggactatt |
8484257 |
T |
|
| Q |
197 |
ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggacc |
253 |
Q |
| |
|
|| ||||||||| | ||| ||| |||| ||||||| ||||||| ||| |||| |||| |
|
|
| T |
8484258 |
ttatagtttatcttaagtcgggaactagagtgacaacgaggtgcaaaatcagagacc |
8484314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 8077545 - 8077696
Alignment:
| Q |
98 |
actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaagg----taaggactaaactgataacaaatatatatattcagggact |
193 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| | ||||| ||||||| || | |||||||||||| ||||||| || || | |||||| | | |
|
|
| T |
8077545 |
acttttaatttggtctctatgattgacacatcagtcgttaacataatttttcaacggttataaggactaaacagataacagatctacacattcagaaatt |
8077644 |
T |
|
| Q |
194 |
attttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagt |
245 |
Q |
| |
|
||||| || |||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
8077645 |
attttataatttatcctgagtcggagactaaagtgacaacgaggtgtaaagt |
8077696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 8075601 - 8075500
Alignment:
| Q |
152 |
ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcaggga |
251 |
Q |
| |
|
|||||||||||||||||||||| || || | ||||| ||| |||||||||||||||| | ||| || ||||||||| ||| | |||||||||||| ||| |
|
|
| T |
8075601 |
ggtaaggactaaactgataacagatctacacattcaaggattattttgtagtttatcataagtcggagactaaagtaacaacatggtgtaaagtcaagga |
8075502 |
T |
|
| Q |
252 |
cc |
253 |
Q |
| |
|
|| |
|
|
| T |
8075501 |
cc |
8075500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 17589681 - 17589748
Alignment:
| Q |
186 |
cagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggacc |
253 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| | ||| | ||| |||||||||| ||||||||||||| |
|
|
| T |
17589681 |
cagggactattttgtattttatccggagttagagaccattgtgtcagcgaggtgcaaagtcagggacc |
17589748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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