View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10831_high_40 (Length: 247)
Name: NF10831_high_40
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_high_40 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 7952074 - 7952312
Alignment:
| Q |
6 |
gagatgaaaacgtaaggaagtatagttgagggacgaaaacgtatagattgttggttgtttggaccaaaatgaaacataaaaattaattagggaaccaacc |
105 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7952074 |
gagacgaaaacgtaagaaagtatagttgagggacgaaaacgtatagattgttggttgtttggaccaaaatgaaacataaaaattaattaggggaccaacc |
7952173 |
T |
|
| Q |
106 |
gcccaattaaacctataccattatatataag-aaagaagtcaagtttattttatatataaatatagattacatctttcttgaccaataaacagcatatag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
7952174 |
gcccaattaaacctataccattatatataagcaaagaagtcaagtttattttatatataaatatagattaca----tcttgaccaataaacaacatatag |
7952269 |
T |
|
| Q |
205 |
ataattattaaatactcttttaataaaagaataataaatctct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7952270 |
ataattattaaatactcttttaataaaagaataataaacctct |
7952312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University