View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_high_48 (Length: 239)
Name: NF10831_high_48
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32023985 - 32024208
Alignment:
| Q |
1 |
caagttgcaaacaaattgaacggattcaagaataggaatgtcataaaaagtcacacta-caaggaaaaactcataagcttgcataagttccttatgtaaa |
99 |
Q |
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| T |
32023985 |
caagttgcaaacaaattgaacggattcaagattaggaatgtcatcaaaagtcacactaacaaggaaaaactcataagcttacataagttccttatgtaaa |
32024084 |
T |
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| Q |
100 |
atgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttgattttatttggagaaacaaac |
199 |
Q |
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| T |
32024085 |
atgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttgattttatttggagaaacaaac |
32024184 |
T |
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| Q |
200 |
acgtccctagtgttgtcttgattc |
223 |
Q |
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||||||||||| |||||||||||| |
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| T |
32024185 |
acgtccctagtattgtcttgattc |
32024208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 9602905 - 9602734
Alignment:
| Q |
5 |
ttgcaaacaaattgaacggattcaagaataggaatgtcataaaaagtcacacta-caaggaaaaactcataagcttgcata-agttccttatgtaaaatg |
102 |
Q |
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||||||||||||| |||||||||| || | |||||||||| |||||| |||||| |||| || ||||||| ||||||||| | |||||||||||||||| |
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| T |
9602905 |
ttgcaaacaaattcaacggattcatgattgggaatgtcatcaaaagttacactaacaagaaagaactcatgagcttgcatgtaattccttatgtaaaatg |
9602806 |
T |
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| Q |
103 |
ctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
178 |
Q |
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| T |
9602805 |
ctcctgggattccaaaa----tcagcatcccaatcaaagtgaatactaaatgcatcttgtcttgctcccaaggttg |
9602734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 6452556 - 6452640
Alignment:
| Q |
90 |
cttatgtaaaatgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
178 |
Q |
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||||||||||||||||||||||||||||| | | ||| || | |||||| |||||| ||||| |||||||||||||||||||||| |
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| T |
6452556 |
cttatgtaaaatgctcctgggattccaaagtta-gcatcat---attcaaagaaaatactgaatgcatcttgtcttgctcccaaagttg |
6452640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 36743586 - 36743505
Alignment:
| Q |
93 |
atgtaaaatgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
178 |
Q |
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||||||||||| ||||| |||||||||| |||||||||| ||||| | || ||| ||||| |||||||||||| |||| |||| |
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| T |
36743586 |
atgtaaaatgcacctggtattccaaaat----cattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttg |
36743505 |
T |
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