View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_high_54 (Length: 226)

Name: NF10831_high_54
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_high_54
NF10831_high_54
[»] chr7 (2 HSPs)
chr7 (4-186)||(2754153-2754333)
chr7 (146-175)||(6969096-6969125)
[»] chr6 (2 HSPs)
chr6 (4-186)||(15357214-15357394)
chr6 (89-186)||(28704564-28704661)
[»] scaffold0576 (1 HSPs)
scaffold0576 (4-186)||(2203-2383)
[»] chr8 (1 HSPs)
chr8 (4-186)||(3731761-3731941)
[»] chr1 (1 HSPs)
chr1 (4-186)||(20262152-20262332)
[»] chr2 (1 HSPs)
chr2 (4-186)||(28655984-28656163)
[»] chr5 (1 HSPs)
chr5 (135-176)||(28735822-28735863)
[»] chr4 (2 HSPs)
chr4 (146-176)||(51238020-51238050)
chr4 (135-176)||(7422171-7422212)
[»] chr3 (2 HSPs)
chr3 (143-176)||(13564514-13564547)
chr3 (143-176)||(27282238-27282271)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 2754153 - 2754333
Alignment:
Q  4 ccactcaacaaacaatcacacatgggaaccatctccattcatacacatacaaggcgagaacttcaacatatacaaaccccaactgcacgtaaacacaagg 103  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2754153 ccactcaacaaacaatcaca--tgggaaccatctccattcatacacatacaaggcgagaacttcaacctatacaaaccccaactgcacgtaaacacaagg 2754250  T
Q  104 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2754251 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 2754333  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 6969096 - 6969125
Alignment:
Q  146 cattcaatcacttccattttcttaaattat 175  Q
    ||||||||||||||||||||||||||||||    
T  6969096 cattcaatcacttccattttcttaaattat 6969125  T

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Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 15357394 - 15357214
Alignment:
Q  4 ccactcaacaaacaatcacacatgggaaccatctccattcatacacatacaaggcgagaacttcaacatatacaaaccccaactgcacgtaaacacaagg 103  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15357394 ccactcaacaaacaatcaca--tgggaaccatctccattcatacacatacaaggcgagaacttcaacctatacaaaccccaactgcacgtaaacacaagg 15357297  T
Q  104 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15357296 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 15357214  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 28704564 - 28704661
Alignment:
Q  89 cacgtaaacacaaggcaagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||| ||||||||||||||||||  || |||||||||||| |||||||||||||||||||||| ||  || |||||||||||| ||||||||||||||    
T  28704564 cacgcaaacacaaggcaagaacattccatgcaaacacaactttgaaacatataattgcattcattcgatttcattttcttaaaatatttcctataaac 28704661  T

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Target: scaffold0576 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 2383 - 2203
Alignment:
Q  4 ccactcaacaaacaatcacacatgggaaccatctccattcatacacatacaaggcgagaacttcaacatatacaaaccccaactgcacgtaaacacaagg 103  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2383 ccactcaacaaacaatcaca--tgggaaccatctccattcatacacatacaaggcgagaacttcaacctatacaaaccccaaccgcacgtaaacacaagg 2286  T
Q  104 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2285 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 2203  T

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Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 3731941 - 3731761
Alignment:
Q  4 ccactcaacaaacaatcacacatgggaaccatctccattcatacacatacaaggcgagaacttcaacatatacaaaccccaactgcacgtaaacacaagg 103  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  3731941 ccactcaacaaacaatcaca--tgggaaccatctccattcatacacatacaaggcgagaacttcaacctatacaaaccccaacagcacgtaaacacaagg 3731844  T
Q  104 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3731843 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 3731761  T

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Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 20262332 - 20262152
Alignment:
Q  4 ccactcaacaaacaatcacacatgggaaccatctccattcatacacatacaaggcgagaacttcaacatatacaaaccccaactgcacgtaaacacaagg 103  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20262332 ccactcaacaaaaaatcaca--tgggaaccatctccattcatacacatacaaggcgagaacttcaacctatacaaaccccaactgcacgtaaacacaagg 20262235  T
Q  104 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20262234 caagaacagaccttgcaaccacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 20262152  T

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Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 28656163 - 28655984
Alignment:
Q  4 ccactcaacaaacaatcacacatgggaaccatctccattcatacacatacaaggcgagaacttcaacatatacaaaccccaactgcacgtaaacacaagg 103  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28656163 ccactcaacaaaaaatcaca--tgggaaccatctccattcatacacatacaaggcgagaacttcaacctatacaaaccccaactgcacgtaaacacaagg 28656066  T
Q  104 caagaacagaccttgcaaacacaacattgaaacatataattgcattcaatcacttccattttcttaaattatttcctataaac 186  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28656065 caagaacagaccttgcaaccacaacattgaaacatataatt-cattcaatcacttccattttcttaaattatttcctataaac 28655984  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 28735822 - 28735863
Alignment:
Q  135 acatataattgcattcaatcacttccattttcttaaattatt 176  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  28735822 acatataattacattcaatcacttctattttcttaaattatt 28735863  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 51238020 - 51238050
Alignment:
Q  146 cattcaatcacttccattttcttaaattatt 176  Q
    |||||||||||||||||||||||||||||||    
T  51238020 cattcaatcacttccattttcttaaattatt 51238050  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 7422212 - 7422171
Alignment:
Q  135 acatataattgcattcaatcacttccattttcttaaattatt 176  Q
    |||||||||| |||||||||||||| ||||||| ||||||||    
T  7422212 acatataattacattcaatcacttctattttctcaaattatt 7422171  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 13564547 - 13564514
Alignment:
Q  143 ttgcattcaatcacttccattttcttaaattatt 176  Q
    ||||||||||||||||||||||||| ||||||||    
T  13564547 ttgcattcaatcacttccattttctcaaattatt 13564514  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 27282238 - 27282271
Alignment:
Q  143 ttgcattcaatcacttccattttcttaaattatt 176  Q
    |||||||||||||| |||||||||||||||||||    
T  27282238 ttgcattcaatcacctccattttcttaaattatt 27282271  T

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