View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_1 (Length: 516)

Name: NF10831_low_1
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_1
NF10831_low_1
[»] chr4 (7 HSPs)
chr4 (130-481)||(45858795-45859142)
chr4 (128-476)||(45876731-45877069)
chr4 (332-463)||(56208539-56208670)
chr4 (326-470)||(47293456-47293600)
chr4 (326-464)||(55705881-55706019)
chr4 (351-459)||(54304249-54304357)
chr4 (138-220)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (326-471)||(35854542-35854687)
chr5 (326-402)||(35802504-35802580)
chr5 (328-459)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (321-462)||(24357450-24357591)
chr2 (131-238)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (325-464)||(7972083-7972222)
chr8 (326-459)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 130 - 481
Target Start/End: Complemental strand, 45859142 - 45858795
Alignment:
Q  130 caggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttt 229  Q
    ||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||||| || ||  || | |||||||||||||||    
T  45859142 caggccacatgaagcaaagctatttgccaagagaacacagaatgcttataaacaatttcgagacaaagctgccctttcccgagctatgactgtatgtttt 45859043  T
Q  230 aaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggtaga 329  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||||    |||||||||||| ||||||||| ||||||||||||||    
T  45859042 aaatttatttaagaaaaatctattttccatgctttatgttcttcctccttgtatatcca----atagttacttaccgctactgtcctgtcactaggtaga 45858947  T
Q  330 caagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgct 429  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  45858946 caagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctattgct 45858847  T
Q  430 atagccaaactgaaggccgatatacctcaagacagtcaggttgatttaagaa 481  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||| ||||    
T  45858846 atagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaa 45858795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 128 - 476
Target Start/End: Complemental strand, 45877069 - 45876731
Alignment:
Q  128 tgcaggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtt 227  Q
    ||||||||||||||||||| |||||||||||||    || | ||| |||||||||||||||| || || || ||| | || |||||||||||||||||||    
T  45877069 tgcaggccacatgaagcagagctatttgccaagtctgcacagaatttttataaacaatttcgtgataaggcggctttttccagatcaatgactgtatgtt 45876970  T
Q  228 ttaaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggta 327  Q
    ||||||| ||  |||||||| ||||||||  ||||||||||||||||  ||  ||| ||||    ||||||||    ||||||| ||  ||| |||||||    
T  45876969 ttaaattcatacaagaaaaagctattttc--tgttttctgttcttcccccttctatgtcca----atagttac----agctactatcccgtcgctaggta 45876880  T
Q  328 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 427  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  45876879 gacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctattg 45876780  T
Q  428 ctatagccaaactgaaggccgatatacctcaagacagtcaggttgattt 476  Q
    ||||||| ||| |||| ||  |||||||||||||||| |||||||||||    
T  45876779 ctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt 45876731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 332 - 463
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
Q  332 agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat 431  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  432 agccaaactgaaggccgatatacctcaagaca 463  Q
    ||| ||| ||||||| | ||||||||||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagaca 56208539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
Q  326 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 425  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||| || |||||    
T  47293456 tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 47293555  T
Q  426 tgctatagccaaactgaaggccgatatacctcaagacagtcaggt 470  Q
    ||||||||| ||| |||||||| ||||||||||| |||| |||||    
T  47293556 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 47293600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 326 - 464
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
Q  326 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 425  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  55705881 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 55705980  T
Q  426 tgctatagccaaactgaaggccgatatacctcaagacag 464  Q
    ||||||  | ||| |||| ||  ||||||||||| ||||    
T  55705981 tgctattacaaaattgaaagctaatatacctcaaaacag 55706019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 459
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
Q  351 ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat 450  Q
    ||||| ||||||||| |||||||| |||  |||||  |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| ||    
T  54304249 ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat 54304348  T
Q  451 atacctcaa 459  Q
    |||||||||    
T  54304349 atacctcaa 54304357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 56208760 - 56208678
Alignment:
Q  138 atgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgact 220  Q
    ||||||||| ||||||||| |||||| || || || ||||||||||||||||||| || || ||||| || ||||||||||||    
T  56208760 atgaagcagagctatttgctaagagagcacaacatatttataaacaatttcgagataatgcggctctttccagatcaatgact 56208678  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 326 - 471
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
Q  326 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 425  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  426 tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt 471  Q
    ||||||||| ||| |||||||| ||||||||||| |||| ||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt 35854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  326 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct 402  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 328 - 459
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
Q  328 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 427  Q
    ||||||||| || || || ||||  ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  428 ctatagccaaactgaaggccgatatacctcaa 459  Q
    |||| || ||| | |||||| |||||||||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaa 10521434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 321 - 462
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
Q  321 ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt 420  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  | || ||     
T  24357450 ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga 24357549  T
Q  421 gctattgctatagccaaactgaaggccgatatacctcaagac 462  Q
    |||||||| ||||| ||| |||||||| ||||||||||||||    
T  24357550 gctattgccatagcaaaattgaaggccaatatacctcaagac 24357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 24357269 - 24357376
Alignment:
Q  131 aggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttta 230  Q
    |||||| ||||||||| ||||||||||||     || | ||||  |||||||||||||||||||| || ||| | || ||||| ||||||||||||| ||    
T  24357269 aggccagatgaagcagagctatttgccaaatctgcacagaatgcatataaacaatttcgagacaaggcagctttatccagatctatgactgtatgttcta 24357368  T
Q  231 aatttatt 238  Q
    ||||||||    
T  24357369 aatttatt 24357376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 325 - 464
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
Q  325 gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta 424  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||||||  ||||  |||| |||||||    
T  7972222 gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta 7972123  T
Q  425 ttgctatagccaaactgaaggccgatatacctcaagacag 464  Q
    |||||||||| ||| |||||||| || | |||||| ||||    
T  7972122 ttgctatagcaaaattgaaggccaatcttcctcaaaacag 7972083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 459
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
Q  326 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 425  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||| |||||| ||||| ||| |||||| ||||||||||||||  |||| |  |||||    
T  7961851 tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat 7961752  T
Q  426 tgctatagccaaactgaaggccgatatacctcaa 459  Q
    ||||||||| ||| |||||||| |||| ||||||    
T  7961751 tgctatagcaaaattgaaggccaatattcctcaa 7961718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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