View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_11 (Length: 384)
Name: NF10831_low_11
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 7908410 - 7908573
Alignment:
| Q |
202 |
ttgatttgagaatcaatgagtaaatagtatttaagagaataaatccattaacatttgtttgcatgttgtagcatgatgtgtgttaaa-cgtcccgggacc |
300 |
Q |
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| T |
7908410 |
ttgatttgagaatcaatgagtaaatagtatctaatggaataaatccattaacatttgtttgcatgttgtagc-----gtgtgttaaagcgtcacgggacc |
7908504 |
T |
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| Q |
301 |
atttggtcttagggatttaccacctcagctatcatgcttatcattatgccattaatcttatgaggttca |
369 |
Q |
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| T |
7908505 |
atttggtcttagggatttaccacctcagctatcatggttatcattatgccattaatcttatgaggttca |
7908573 |
T |
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Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 7908226 - 7908319
Alignment:
| Q |
17 |
gttacaatgttgtgctgatgcatatatacttgatataacgtaggagaaagttgtgttgtgatatctttcgtccaaagtttgtcttcaacccttt |
110 |
Q |
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| T |
7908226 |
gttacaatgttgtgctgatgcatatatactggatataacgtaggagaaagttgtgttgtgatatctttcgtccaaagtttgtctccaacccttt |
7908319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 7915105 - 7915191
Alignment:
| Q |
20 |
acaatgttgtgctgatgcatatatacttgatataacgtaggagaaagttgtgttgtgatatctttcgtccaaagtttgtcttcaacc |
106 |
Q |
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| T |
7915105 |
acaatgttgtgttgattcatatatattggacataacgtaggagaaagttgtggtgtgatatatttcatccaaagtttgtgttcaacc |
7915191 |
T |
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