View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_12 (Length: 382)
Name: NF10831_low_12
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 4441688 - 4441323
Alignment:
| Q |
1 |
tgttggtaaatgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcattatcaatttggattttcagccttttcaaggaagctg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441688 |
tgttggtaaatgttaaggtactcaagatctggtgcatttatttcaagcgaagacccaaagtcattatcaatttggattttcagccttttcaaggaagctg |
4441589 |
T |
|
| Q |
101 |
ggaggcaaacattctccaagctatcagataaaaagttaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441588 |
ggaggcaaacattctccaagctatcagataaaaagtgaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttccac |
4441489 |
T |
|
| Q |
201 |
gttacagaggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaac |
300 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441488 |
gttaccgaggacatcaattagcagcatcttcagcgatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaac |
4441389 |
T |
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| Q |
301 |
aaacaaataatgttatatcacatttcataactatttagcactgatacttaagattgaagtcatata |
366 |
Q |
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| T |
4441388 |
aaacaaataatgttatatcacatttcataactatttaggactgatacttaagattgaagtcatata |
4441323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 29585432 - 29585470
Alignment:
| Q |
9 |
aatgttaaggtactcaagatctggcgcatttatttcaag |
47 |
Q |
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| T |
29585432 |
aatgttaaggtactcaagatcaggcgcatttatttcaag |
29585470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 4427718 - 4427818
Alignment:
| Q |
10 |
atgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcattatcaatttggattttcagccttttcaaggaagctgggaggcaaa |
109 |
Q |
| |
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|||| ||||||||||||||| || || || |||||||| ||| ||||| ||||||||||| |||| ||| ||||||||| |||| ||||| ||||| |
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| T |
4427718 |
atgtaaaggtactcaagatccggtgctttcatttcaaggtaagccccaacttcattatcaatgatgattgtcaaccttttcaaagaaggtgggacgcaaa |
4427817 |
T |
|
| Q |
110 |
c |
110 |
Q |
| |
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| |
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|
| T |
4427818 |
c |
4427818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 355
Target Start/End: Original strand, 8383029 - 8383383
Alignment:
| Q |
3 |
ttggtaaatgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcatta---tcaatttggattttcagccttttcaaggaagct |
99 |
Q |
| |
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|||||||||||| | |||||||||||||||||| |||||||||||||||| ||| | || ||| || ||| ||||||||||||||||||| || | |
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| T |
8383029 |
ttggtaaatgtttatgtactcaagatctggcgcgtttatttcaagcgaaggcccgacctccttactctctattccaattttcagccttttcaaggtaggt |
8383128 |
T |
|
| Q |
100 |
gggaggcaaacattctccaagctatcagataaaaagttaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttcca |
199 |
Q |
| |
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|| ||||||||||| |||||||||| | |||||| ||||| || | | |||||||||||||||||||| | || |||||||| || | || |||||||| |
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| T |
8383129 |
ggaaggcaaacattgtccaagctattggttaaaaatttaagatctagaacttcgatgtttgggcagccacatagaagtgcattcaccataggcacttcca |
8383228 |
T |
|
| Q |
200 |
tgttacagaggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaa |
299 |
Q |
| |
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| || || || ||||||||||| |||||||| ||||||||||||||| ||| |||||| | || |||||||||| || |||| |||| |||| |
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| T |
8383229 |
cataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtaaagctttgtatgtttagatgaattgcattgcaaagactgtggaa |
8383328 |
T |
|
| Q |
300 |
caaacaaataatgttatatcacatttcataactatttagcactgatacttaagatt |
355 |
Q |
| |
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||||| ||| || |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
8383329 |
caaacgaattattttatatcaca-ttcataactatttagcactgatacataagatt |
8383383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 8367030 - 8367361
Alignment:
| Q |
3 |
ttggtaaatgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcatta---tcaatttggattttcagccttttcaaggaagct |
99 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||||||||| ||| || | |||| | || |||| ||||||||||||||||||| || | |
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| T |
8367030 |
ttggtaaatgttgatgtactcaagatctggcgcgtttatttcaagcaaaggaccgacctcatcactctctatttcaattttcagccttttcaaggtaggt |
8367129 |
T |
|
| Q |
100 |
gggaggcaaacattctccaagctatcagataaaaagttaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttcca |
199 |
Q |
| |
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|| ||| ||||||| |||||||||| | || ||| ||||| || | |||||||||||||||||||||| | || |||||||| || | || | || || |
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| T |
8367130 |
ggaaggaaaacattgtccaagctattggttagaaatttaagatctagagcttcgatgtttgggcagccacatagaagtgcattcaccatagggatttgca |
8367229 |
T |
|
| Q |
200 |
tgttacagaggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaa |
299 |
Q |
| |
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| || || || ||||||||||| |||||||| ||||||||||||||| |||| |||||| | || |||||||||| ||| || ||||||| | || |
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| T |
8367230 |
cataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtagagctttgaatgtttagatgaatttcactacgaatactgtgtaa |
8367329 |
T |
|
| Q |
300 |
caaacaaataatgttatatcacatttcataac |
331 |
Q |
| |
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||||||||| || |||||| | |||||||||| |
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| T |
8367330 |
caaacaaattatattatatgaaatttcataac |
8367361 |
T |
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