View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_13 (Length: 375)
Name: NF10831_low_13
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 30388239 - 30387886
Alignment:
| Q |
1 |
aaacagaaagaggaagtgatgtagagctcctcctagaaaaaccaattatcatgattttaagagttcctcgagcgtaggagcgaaaagtagaatatctttt |
100 |
Q |
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| T |
30388239 |
aaacaaaaagaggaagcgatgtagagctcatcctagaaaaaatggttatcatgattttaagagttcctcgagagtatgagcaaaaagtagaatatcattt |
30388140 |
T |
|
| Q |
101 |
tagggaacccaaagaagaaagagaccgaaggaggatgctagatagctcccattttccaatgaaatcaacgaggtgtgcataatgcaacatgttctctttg |
200 |
Q |
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| T |
30388139 |
tagggatccccaagaagaaagaaaccgaaggaggatgctacatagctccccttttccaaggaaatcaatgaggtatgcatagtgcaacaagttctctttg |
30388040 |
T |
|
| Q |
201 |
gcactatggaggaatactatgacaaaagagacctacttgagcaattcaccttcttttttgttggaatgaagattgaacgagaatcagactctcttaagtc |
300 |
Q |
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||||||||| ||||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
30388039 |
gcactatgggggaatactacgacaagagaaacctacctgagcacttcaccttcttttttgttggaatgaagattgaaccagaatcagactctctcaagtc |
30387940 |
T |
|
| Q |
301 |
cctagtgtttccatgcacactgaagcgagctgatttattttggttctctcatct |
354 |
Q |
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| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30387939 |
catagtcttttcatgcacactgaagcgagctgatttattttggttctctcatct |
30387886 |
T |
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