View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_14 (Length: 364)
Name: NF10831_low_14
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 7176816 - 7176471
Alignment:
| Q |
1 |
ctattatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggactttcaacatgtcaagctttg |
100 |
Q |
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| T |
7176816 |
ctattatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggactttcaacatgtcaagctttg |
7176717 |
T |
|
| Q |
101 |
atgcatgaaaatcataatcctggtgatgtatatcctggtagaaaactactcgttcctcttagatgtgcttgtcccacaaagaatcaaactcagaaaaaca |
200 |
Q |
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| T |
7176716 |
atgcatgaaaatcataatcctggtgatgtatatcctggtagaaaactacttgttcctcttagatgtgcttgtcctacaaagaatcaaactcagaaaaaca |
7176617 |
T |
|
| Q |
201 |
taaagtatcttttgagttatttggtagattggggtgattctgtttcattcattagtgataaatttggtgttaactttagaaccactcttgaagctaatac |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7176616 |
taaagtatcttttgagttatttggttgattggggtgattctgtttcattcattagtgataaatttggtgttaactttagaaccactcttgaagctaatac |
7176517 |
T |
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| Q |
301 |
actttctttaacacaatctacaatttatccctttacaacacttctt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7176516 |
actttctttaacacaatctacaatttatccctttacaacacttctt |
7176471 |
T |
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