View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_16 (Length: 354)
Name: NF10831_low_16
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 54478755 - 54478530
Alignment:
| Q |
32 |
tataattaatatatatttgcattattttcatgctttaagaacagtttttctttaatattgatgtagtatcgtacattatagaaaataaaataatgactaa |
131 |
Q |
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| T |
54478755 |
tataattaatatatatttgcattattttcatgctttaagaacagtttttctttaatattgatgtagtatcgtacattatagaaaataaaataatgactaa |
54478656 |
T |
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| Q |
132 |
tttgctcattggacgactaaaaggtttgtcaaaactagatacacgtacttatgcaaaacttgtggacctgcaatagattgtagttaattggaaacaaatt |
231 |
Q |
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| T |
54478655 |
tttgctcattggacgactaaaaggtttgtcaaaactagatac----acttatgcaaaacttgtggacctgcaatagattgtagttaattggaaacaaatt |
54478560 |
T |
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| Q |
232 |
ccaaatattatgatgaagctttatattgaa |
261 |
Q |
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| T |
54478559 |
ccaaatattatgatgaagctttatattgaa |
54478530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 54478509 - 54478421
Alignment:
| Q |
252 |
ttatattgaagacaagcagatagcacttgtttggttctacgaggatgcagatcaagattttagacaaaaagccaagttaaagaactttt |
340 |
Q |
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| T |
54478509 |
ttatattgaagacaagcagatagcacttgtttggttctacgaggatgcagatcaagatgttagacaaaaagccaagttaaagaactttt |
54478421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 44590293 - 44590237
Alignment:
| Q |
256 |
attgaagacaagcagatagcacttgtttggttctacgaggatgcagatcaagatttt |
312 |
Q |
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| T |
44590293 |
attgaagataaggagacagcacttgtttggtgctacgaggatgcagatccagatttt |
44590237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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