View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_17 (Length: 354)

Name: NF10831_low_17
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_17
NF10831_low_17
[»] chr4 (3 HSPs)
chr4 (76-342)||(41005840-41006105)
chr4 (111-171)||(55768963-55769023)
chr4 (111-171)||(55833219-55833279)
[»] chr3 (2 HSPs)
chr3 (57-208)||(48221367-48221517)
chr3 (57-91)||(15750821-15750855)
[»] chr8 (4 HSPs)
chr8 (139-215)||(45332029-45332105)
chr8 (111-209)||(25985178-25985274)
chr8 (125-207)||(8879984-8880066)
chr8 (14-88)||(13984170-13984244)
[»] chr5 (1 HSPs)
chr5 (113-208)||(35685493-35685588)
[»] chr1 (3 HSPs)
chr1 (3-88)||(34827770-34827855)
chr1 (153-208)||(27445576-27445631)
chr1 (153-209)||(7921605-7921661)
[»] chr7 (2 HSPs)
chr7 (153-208)||(48919066-48919121)
chr7 (59-95)||(24436558-24436594)
[»] chr2 (2 HSPs)
chr2 (155-208)||(45368173-45368226)
chr2 (112-208)||(11992655-11992751)
[»] scaffold0286 (1 HSPs)
scaffold0286 (56-88)||(169-201)
[»] chr6 (4 HSPs)
chr6 (56-88)||(2208070-2208102)
chr6 (56-88)||(5258818-5258850)
chr6 (56-88)||(5631399-5631431)
chr6 (124-208)||(9706425-9706509)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 76 - 342
Target Start/End: Original strand, 41005840 - 41006105
Alignment:
Q  76 atatggaatgtaattttaacnnnnnnntgtagtaattctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggtttaaatatgttg 175  Q
    ||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41005840 atatggaatgtaattttaacaaaaa--tgtagtatttctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggttaaaatatgttg 41005937  T
Q  176 gattcatacttcaaaacgatggagaaatagaaggtgtaaattatataattcaattagagtggttgaaaagaagaggatctcacgtgttttatgcgatcta 275  Q
     ||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  41005938 -attcatagttcaaaacgatggagaaatagaatgtgtaaattatagaattcaagtagagtggttgaaaagaagaggatctcacgtgttttatgcgatata 41006036  T
Q  276 aagtcccccttaagttggagggga--nnnnnnnnatcatgtagatgtaagatcggcggtgttgtatgtg 342  Q
    |||||||||||||||||||||| |          ||||||| |||||||||||||||||||||||||||    
T  41006037 aagtcccccttaagttggagggaattttttttttatcatgtggatgtaagatcggcggtgttgtatgtg 41006105  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 55769023 - 55768963
Alignment:
Q  111 ttctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggtttaaatat 171  Q
    ||||| ||||||  |||||||| |||| ||||||||| ||| ||| |||||||||||||||    
T  55769023 ttctaccttagaggtgaaagttgaagatcatgtcataccacaagtaacacggtttaaatat 55768963  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 55833279 - 55833219
Alignment:
Q  111 ttctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggtttaaatat 171  Q
    ||||| ||||||  |||||||| |||| ||||||||| ||| ||| |||||||||||||||    
T  55833279 ttctaccttagaggtgaaagttgaagatcatgtcataccacaagtaacacggtttaaatat 55833219  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 48221367 - 48221517
Alignment:
Q  57 agtagaagtaagacaaagtatatggaatgtaattttaacnnnnnnntgtagtaattctagcttagaaatgaaagttaaagagcatgtcatatcactagtt 156  Q
    ||||||||||||||| |||||||| |||||||||| | |       ||||||| ||||| ||||||  |||||||| |||| ||| ||||| ||| ||||    
T  48221367 agtagaagtaagacatagtatatgtaatgtaatttcagcaaaagg-tgtagtagttctatcttagaggtgaaagttgaagatcatatcataccacaagtt 48221465  T
Q  157 acacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    ||||  ||||||||| ||||||||||| | ||||| ||  ||||| ||||||    
T  48221466 acacattttaaatatcttggattcatagtacaaaatgacagagaagtagaag 48221517  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 15750821 - 15750855
Alignment:
Q  57 agtagaagtaagacaaagtatatggaatgtaattt 91  Q
    ||||||||||||| |||||||||||||||||||||    
T  15750821 agtagaagtaagataaagtatatggaatgtaattt 15750855  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 45332105 - 45332029
Alignment:
Q  139 catgtcatatcactagttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaaggtgtaaa 215  Q
    ||||||||| ||| |||||||||||||||||||  ||| |||||| | ||||||| ||||||||||| || ||||||    
T  45332105 catgtcataccacaagttacacggtttaaatatcctggcttcatagtacaaaacggtggagaaataggagatgtaaa 45332029  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 25985178 - 25985274
Alignment:
Q  111 ttctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaagg 209  Q
    ||||||||||||  ||||||||   || ||| ||||| ||| ||||||||||||||||||| ||||||  ||| | |||||  ||||||||||||||||    
T  25985178 ttctagcttagaggtgaaagttg--gatcatatcataccacaagttacacggtttaaatatattggatctatagtacaaaaatatggagaaatagaagg 25985274  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 8880066 - 8879984
Alignment:
Q  125 tgaaagttaaagagcatgtcatatcactagttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaa 207  Q
    |||||||| || | ||| ||||||| | ||||||||||||||||||| ||||  ||||| | ||||| || ||||||||||||    
T  8880066 tgaaagttgaaaatcatatcatatcccaagttacacggtttaaatatcttgggctcatagtacaaaatgaaggagaaatagaa 8879984  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 13984170 - 13984244
Alignment:
Q  14 agagatttggagacaggccttgaaagcatatgacttcctaacgagtagaagtaagacaaagtatatggaatgtaa 88  Q
    ||||| ||||||||| |||||  |||  ||||||||||  | ||||||||| |||||| ||||||||||||||||    
T  13984170 agagacttggagacaagccttagaagtgtatgacttccgcatgagtagaagcaagacagagtatatggaatgtaa 13984244  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 35685493 - 35685588
Alignment:
Q  113 ctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    ||||||||||| | |||||| |||||||| ||||||||| ||| |||  |||||||||| ||||||| ||| | ||||| ||  ||||||||||||    
T  35685493 ctagcttagaagtcaaagttgaagagcatatcatatcacaagtaacatagtttaaatatattggatttatagtacaaaatgaaagagaaatagaag 35685588  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 34827855 - 34827770
Alignment:
Q  3 aatgggaggtcagagatttggagacaggccttgaaagcatatgacttcctaacgagtagaagtaagacaaagtatatggaatgtaa 88  Q
    |||||||||| ||||| || |||||| |||||  |||| |||||||| | |   ||||||| ||||||||||||||||||||||||    
T  34827855 aatgggaggttagagacttagagacaagccttagaagcctatgactttcgactaagtagaactaagacaaagtatatggaatgtaa 34827770  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 27445576 - 27445631
Alignment:
Q  153 agttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    ||||||||||||||| |||||||| | |||| | ||||| ||||||||||||||||    
T  27445576 agttacacggtttaattatgttgggtccatagtacaaaatgatggagaaatagaag 27445631  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 7921605 - 7921661
Alignment:
Q  153 agttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaagg 209  Q
    ||||||||| |||| |||| |||||| |||| | ||||||||| |||||||||||||    
T  7921605 agttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaagg 7921661  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 48919066 - 48919121
Alignment:
Q  153 agttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    ||||||||||||||||||| |||||| |||| | ||||| || |||||||||||||    
T  48919066 agttacacggtttaaatattttggatccatagtacaaaatgacggagaaatagaag 48919121  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 24436594 - 24436558
Alignment:
Q  59 tagaagtaagacaaagtatatggaatgtaattttaac 95  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  24436594 tagaagcaagacaaagtatatgaaatgtaattttaac 24436558  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 45368226 - 45368173
Alignment:
Q  155 ttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    ||||||||||||||||| |||| | |||| | ||||| ||||||||||||||||    
T  45368226 ttacacggtttaaatatcttgggtccataatacaaaatgatggagaaatagaag 45368173  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 11992751 - 11992655
Alignment:
Q  112 tctagcttagaaatgaaagttaaagagcatgtcatatcactagttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    |||| ||||||  ||||||||  ||| ||| ||||| | | ||||||||||||||||||| |||| |  ||| | ||||| ||||||||||||||||    
T  11992751 tctaccttagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaag 11992655  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 201 - 169
Alignment:
Q  56 gagtagaagtaagacaaagtatatggaatgtaa 88  Q
    |||||||||||||||||| ||||||||||||||    
T  201 gagtagaagtaagacaaaatatatggaatgtaa 169  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 2208102 - 2208070
Alignment:
Q  56 gagtagaagtaagacaaagtatatggaatgtaa 88  Q
    |||||||||||||||||| ||||||||||||||    
T  2208102 gagtagaagtaagacaaaatatatggaatgtaa 2208070  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 5258850 - 5258818
Alignment:
Q  56 gagtagaagtaagacaaagtatatggaatgtaa 88  Q
    ||||||||| |||||||||||||||||||||||    
T  5258850 gagtagaagcaagacaaagtatatggaatgtaa 5258818  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 5631399 - 5631431
Alignment:
Q  56 gagtagaagtaagacaaagtatatggaatgtaa 88  Q
    ||||||||| |||||||||||||||||||||||    
T  5631399 gagtagaagcaagacaaagtatatggaatgtaa 5631431  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 9706425 - 9706509
Alignment:
Q  124 atgaaagttaaagagcatgtcatatcactagttacacggtttaaatatgttggattcatacttcaaaacgatggagaaatagaag 208  Q
    |||||||||  ||| ||| ||||| | | ||||||||||||||||||| |||| | |||  | ||||| ||||||||||||||||    
T  9706425 atgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatggtacaaaatgatggagaaatagaag 9706509  T

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