View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_19 (Length: 346)
Name: NF10831_low_19
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 11189039 - 11188756
Alignment:
| Q |
15 |
agtaattgatttaggaacatgcaccagtccaacaaatacaaaaaggagattcaaagaattctaatccccgttaaaaatatgaatcaaaactcttttaatt |
114 |
Q |
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| T |
11189039 |
agtaattgatttaggaacatgcaccagtccaacaaatacaaaaaggatattcaaagaattctaatccccgttaaaaatatgaatcaaaactcttttaatt |
11188940 |
T |
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| Q |
115 |
tttgtagcaatcaaacaatcttgcaaactccccacaatttgcaatttttaattataagtttagtaaattatttagtaaaaaacgacaatctctacgaaaa |
214 |
Q |
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| T |
11188939 |
tttgtagcaatcaaacaatcttgcaaactccccacaatttgcaatttttaattataagtttagtaaattacttagtaaaaaacgacaatctctacgaaaa |
11188840 |
T |
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| Q |
215 |
caataacttattacttgaaacaatttaatccacttaccaaatttgtcattgtgtttttaaaaggaataaaaatggtttatcata |
298 |
Q |
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| T |
11188839 |
caataacttattacttgaaacaatttaatccacttaccaaatttgtcattgtgtttttaaaaggaataaaaatggtttatcata |
11188756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 11188623 - 11188568
Alignment:
| Q |
282 |
aaaaatggtttatcataatttagattttgttgatttcttttggattgttgcctttg |
337 |
Q |
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| T |
11188623 |
aaaaatggtttatcataatttagattttgttgatttcttttggattgttgcttttg |
11188568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 7196555 - 7196631
Alignment:
| Q |
128 |
aacaatcttgcaaactccccacaatttgcaatttttaattataagtttagtaaattatttagtaaaaaacgacaatc |
204 |
Q |
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| T |
7196555 |
aacaatcttccaaattccccccaatttatagtttttaaatataagtttagtaaattgtttaatagaaaatgacaatc |
7196631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 9473999 - 9474123
Alignment:
| Q |
58 |
aggagattcaaagaattctaatccccgttaaaaatatgaatcaaaactcttttaatttttgtagcaatcaaacaatcttgcaaactccccacaatttgca |
157 |
Q |
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| T |
9473999 |
aggagattcgaagaattttaatcgc-gtttaaaatatgaataaaaactcatttacttttcatcgtaatcaaacatcttttcaaactcccttcaatttatg |
9474097 |
T |
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| Q |
158 |
atttttaattataagtttagtaaatt |
183 |
Q |
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| T |
9474098 |
gttttaaattataagtttagtaaatt |
9474123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 29540132 - 29540177
Alignment:
| Q |
159 |
tttttaattataagtttagtaaattatttagtaaaaaacgacaatc |
204 |
Q |
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| T |
29540132 |
tttttaattataagtttagtaaattgtctagtagaaaacgacaatc |
29540177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 24762545 - 24762597
Alignment:
| Q |
131 |
aatcttgcaaactccccacaatttgcaatttttaattataagtttagtaaatt |
183 |
Q |
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| T |
24762545 |
aatcttgcaaactcctcccaatttactttttttaattataagtttagtaaatt |
24762597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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