View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_2 (Length: 486)

Name: NF10831_low_2
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_2
NF10831_low_2
[»] scaffold0291 (1 HSPs)
scaffold0291 (8-472)||(7103-7567)
[»] chr7 (12 HSPs)
chr7 (138-240)||(27744575-27744677)
chr7 (119-225)||(23982026-23982133)
chr7 (131-236)||(9667233-9667339)
chr7 (131-236)||(32958489-32958595)
chr7 (136-244)||(44165893-44166003)
chr7 (135-232)||(41780464-41780561)
chr7 (131-236)||(47684489-47684595)
chr7 (133-225)||(13054606-13054699)
chr7 (190-243)||(25091154-25091207)
chr7 (131-234)||(23198527-23198630)
chr7 (158-225)||(36877001-36877069)
chr7 (131-205)||(45725125-45725200)
[»] chr4 (12 HSPs)
chr4 (131-236)||(31351675-31351781)
chr4 (131-241)||(35010385-35010496)
chr4 (131-236)||(13538257-13538363)
chr4 (131-236)||(35130613-35130719)
chr4 (133-234)||(28091333-28091435)
chr4 (131-236)||(50263992-50264097)
chr4 (119-236)||(9460162-9460279)
chr4 (131-235)||(38415497-38415602)
chr4 (136-234)||(23894292-23894391)
chr4 (126-236)||(54733274-54733384)
chr4 (135-234)||(49479458-49479558)
chr4 (131-241)||(17882247-17882356)
[»] chr3 (13 HSPs)
chr3 (119-236)||(21177025-21177142)
chr3 (138-230)||(9737585-9737678)
chr3 (131-242)||(38745295-38745407)
chr3 (137-235)||(17002900-17002996)
chr3 (145-236)||(27100928-27101020)
chr3 (131-235)||(51829559-51829663)
chr3 (131-174)||(41259955-41259998)
chr3 (200-236)||(7950931-7950967)
chr3 (131-167)||(11988933-11988969)
chr3 (133-236)||(21892527-21892630)
chr3 (190-222)||(49284975-49285007)
chr3 (200-236)||(51816022-51816058)
chr3 (137-236)||(55009522-55009622)
[»] chr2 (7 HSPs)
chr2 (145-236)||(9198945-9199038)
chr2 (131-236)||(34319817-34319923)
chr2 (135-236)||(31068899-31069001)
chr2 (131-241)||(37123551-37123662)
chr2 (126-222)||(14368413-14368510)
chr2 (190-236)||(34028097-34028143)
chr2 (131-167)||(44287861-44287897)
[»] chr8 (6 HSPs)
chr8 (131-236)||(28300087-28300193)
chr8 (119-220)||(42445770-42445872)
chr8 (131-236)||(13147746-13147851)
chr8 (190-242)||(31441261-31441313)
chr8 (190-236)||(12959707-12959753)
chr8 (131-167)||(19756430-19756466)
[»] chr5 (7 HSPs)
chr5 (119-234)||(30327657-30327773)
chr5 (131-224)||(24793486-24793580)
chr5 (135-236)||(43406010-43406112)
chr5 (134-236)||(31478693-31478796)
chr5 (135-235)||(20706506-20706607)
chr5 (149-236)||(11361326-11361414)
chr5 (134-233)||(32398219-32398319)
[»] scaffold0166 (1 HSPs)
scaffold0166 (131-224)||(35869-35963)
[»] chr6 (6 HSPs)
chr6 (131-241)||(6922636-6922747)
chr6 (149-236)||(20599412-20599500)
chr6 (131-224)||(7326333-7326427)
chr6 (126-235)||(12606651-12606761)
chr6 (136-236)||(21023693-21023794)
chr6 (133-222)||(2556244-2556334)
[»] chr1 (1 HSPs)
chr1 (131-234)||(35996980-35997084)
[»] scaffold0178 (1 HSPs)
scaffold0178 (131-167)||(9705-9741)
[»] scaffold0035 (1 HSPs)
scaffold0035 (134-241)||(23700-23806)


Alignment Details
Target: scaffold0291 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 7103 - 7567
Alignment:
Q  8 aagcaaaggacgaataaagatcgagagaataacattctaaagcaacttttcaagggtggcttaccttataagacttgtatatttttttataagcaaagta 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  7103 aagctaaggacgaataaagatcgagagaataacattctaaagcaacttttcaagggtgacttaccttataagacaagtatatttttt-ataagcaaagta 7201  T
Q  108 nnnnnnnnnnccaagtaatttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatca 206  Q
               ||||||||||| |||||| ||| || || ||||||| |||||||||||  |||||||||||||| ||||||||| | ||||||||||||    
T  7202 tttttttgt--caagtaatttattggctaaatttacacatattatgtatagagaagtggagaattcgatgttcgatccctgacccctacacaaattatca 7299  T
Q  207 ctggtagctaccaactgagatacacttacgcgacttttataaacaaagtatatattaatttcttgttttggtgctctaatctcaaatataaataatagta 306  Q
    ||||||  || |||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7300 ctggtaattatcaaccgagatacacttccgggacttttataagcaaagtatatattaatttcttgttttggtgctctaatctcaaatataaataatagta 7399  T
Q  307 atgttatttgggcacacaaataggacaacaatgcaggtcacctacactgttcaccctatttatactgtgaaaactttctcttttgtca-nnnnnnngaaa 405  Q
    ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||         |||    
T  7400 atgttatttgggcacacaaatgggacaacaatgcaggtaaccaacactgttcaccctattaatactgtgaaaactttctcttttgtcatttttttttaaa 7499  T
Q  406 atatagatgtgga-ttttggtaatacaaaagttgagttgtgtcatcaacaaatttcataacttcatta 472  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  7500 atatagatgaggatttttggtaacacaaaagttgagttgtgtcatcaacaaatttcataagttcatta 7567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 27744677 - 27744575
Alignment:
Q  138 attcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccctgcacaaattatcactggtagctaccaactgagatacacttacgc 237  Q
    |||||| |||||||||||| |||||||||| ||| |||||||||||| || ||||||||||||||||| ||| |||||| |||||| | |||||||||||    
T  27744677 attcacacacattatgtgtggagaagtggggaatccgatgttcgaactctaaccctgcacaaattatctctgatagctatcaactgcgctacacttacgc 27744578  T
Q  238 gac 240  Q
    |||    
T  27744577 gac 27744575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 23982133 - 23982026
Alignment:
Q  119 caagtaatttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctac 217  Q
    |||||||| || ||||||||||||| ||||||||||| |||||| |||  ||| ||  |||||||| || ||| |||||||||||||| |||||||||||    
T  23982133 caagtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaactctaacctctgcacaaattatccctggtagctac 23982034  T
Q  218 caactgag 225  Q
    ||||||||    
T  23982033 caactgag 23982026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 9667233 - 9667339
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaac-cctgaccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||| ||||||| |||||||||| | ||||||||||||||| |  |||||||| || | |||| ||||||||||| ||| ||||||||||||||| |||    
T  9667233 tggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctac 9667332  T
Q  230 acttacg 236  Q
    |||||||    
T  9667333 acttacg 9667339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 32958595 - 32958489
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgac-cctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| ||||||| |||| || ||||||  ||| ||  |||||||| ||||| ||||||||||||||   |||||||||||||| ||| |||    
T  32958595 tggctagattcacacacattaagtgtggataagtggagaatccggggttcgaactctgactcctgcacaaattatttttggtagctaccaaccgagctac 32958496  T
Q  230 acttacg 236  Q
    |||||||    
T  32958495 acttacg 32958489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 44165893 - 44166003
Alignment:
Q  136 agattcacgcacattatgtgtagagaagtggga-aattcgatgttcgaaccctgaccct-gcacaaattatcactggtagctaccaactgagatacactt 233  Q
    |||||||| |||||||||||| ||||||||||  ||||| | ||||||| || || | | ||| |||||||| ||||||||||||||||||| | |||||    
T  44165893 agattcacacacattatgtgtggagaagtgggggaattcaaggttcgaatcccgatctttgcataaattatccctggtagctaccaactgagctgcactt 44165992  T
Q  234 acgcgactttt 244  Q
    ||| |||||||    
T  44165993 acgagactttt 44166003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 41780561 - 41780464
Alignment:
Q  135 tagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccctg-cacaaattatcactggtagctaccaactgagatacact 232  Q
    ||||||||| ||||||||||||  ||||||| | |||||  ||||||||||||||||| | |||||||||||  || ||||||||||| ||| ||||||    
T  41780561 tagattcacacacattatgtgtgtagaagtgaggaattct-tgttcgaaccctgaccccggcacaaattatccatgatagctaccaaccgagttacact 41780464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 47684489 - 47684595
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||||||| | ||||||| |||||| ||  |||| |||||  | ||||||||||||||||  |||||||  ||||||||| |||    
T  47684489 tggctagattcacacacattatgtatggagaagtaggaaatccggggttcaaaccccaacccctgcacaaattatccttggtagcccccaactgagctac 47684588  T
Q  230 acttacg 236  Q
    || ||||    
T  47684589 acctacg 47684595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 13054699 - 13054606
Alignment:
Q  133 gctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaa-ccctgaccctgcacaaattatcactggtagctaccaactgag 225  Q
    ||||||||| | |||||||||||| ||||||||||||||  |  ||||||| ||| | ||||||||| ||| || |||||||||||||| ||||    
T  13054699 gctagattcgcacacattatgtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaattgag 13054606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 25091207 - 25091154
Alignment:
Q  190 ccctgcacaaattatcactggtagctaccaactgagatacacttacgcgacttt 243  Q
    |||||||||||||||| ||||||||||||||||||| || || |||| ||||||    
T  25091207 ccctgcacaaattatccctggtagctaccaactgagctaaacatacgagacttt 25091154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 23198527 - 23198630
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    |||||||||| || |||||||||||| |||||||||| || |||  ||| ||||||  | ||||||||||||||||  || |||||| |||||||| |||    
T  23198527 tggctagatttacacacattatgtgtggagaagtggggaa-tcggggtttgaaccccaacccctgcacaaattatccttgatagctatcaactgagctac 23198625  T
Q  230 actta 234  Q
    |||||    
T  23198626 actta 23198630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 36877001 - 36877069
Alignment:
Q  158 gagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgag 225  Q
    |||||||||||||| ||  |||||||||| ||||| |||||||||||||  || |||||||||||||||    
T  36877001 gagaagtgggaaatccggggttcgaaccccgacccctgcacaaattatccatgttagctaccaactgag 36877069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 45725125 - 45725200
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatc 205  Q
    |||||||||| ||  |||||||||||||||||||| | |||||||  |||||| || || ||||||||||||||||    
T  45725125 tggctagatttacatacattatgtgtagagaagtgagtaattcgagattcgaatcccgacccctgcacaaattatc 45725200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 31351675 - 31351781
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| || ||||||||| ||||| |||||||| ||  |||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||    
T  31351675 tggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctggtagctaccaactgagctac 31351774  T
Q  230 acttacg 236  Q
    |||||||    
T  31351775 acttacg 31351781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 35010385 - 35010496
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgac-cctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||  |||||||||||| |||||||||||||| ||  |||||||||| ||| ||||||||||||||| ||| ||||||||||||||| ||     
T  35010385 tggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaa 35010484  T
Q  230 acttacgcgact 241  Q
    ||||||| ||||    
T  35010485 acttacgggact 35010496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 13538257 - 13538363
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaac-cctgaccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||||||| | ||||||||||||||| |  |||||||| || | |||| ||||||||||| ||| ||||||||||||||| |||    
T  13538257 tggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctac 13538356  T
Q  230 acttacg 236  Q
    |||||||    
T  13538357 acttacg 13538363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 35130613 - 35130719
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| ||||| ||||||  ||||||||||||| ||  |||||||||| | ||| ||||||||||||| ||||||||||||||||||  |||    
T  35130613 tggctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactac 35130712  T
Q  230 acttacg 236  Q
    |||||||    
T  35130713 acttacg 35130719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 28091333 - 28091435
Alignment:
Q  133 gctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatacac 231  Q
    ||||||||||| |||||||||||| |||||||||| |||| |  |||||||||   | ||||||| |||||||||||| ||||||||||||||| |||||    
T  28091333 gctagattcacacacattatgtgtggagaagtggggaatttggagttcgaacctcaatccctgcataaattatcactgatagctaccaactgagctacac 28091432  T
Q  232 tta 234  Q
    |||    
T  28091433 tta 28091435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 50263992 - 50264097
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcga-accctgaccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| ||||| |||||| |||||||||| ||| ||   |||||  ||| | |||||||||||||||| || |||||||||||||||| |||    
T  50263992 tggctagattcacacacatcatgtgtggagaagtggggaatccgggtttcgagccccggcccctgcacaaattatccct-gtagctaccaactgagttac 50264090  T
Q  230 acttacg 236  Q
    |||||||    
T  50264091 acttacg 50264097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 9460279 - 9460162
Alignment:
Q  119 caagtaatttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccctgcacaaattatcactggtagctacc 218  Q
    |||||| |||| |||||| |||||| |||||||||||| ||||| |||| |||  |   || |||||| |||||| ||||||||||| ||| ||||||||    
T  9460279 caagtagtttagtggctatattcacacacattatgtgtggagaaatggggaatatgggatttgaaccccgaccctacacaaattatctctgatagctacc 9460180  T
Q  219 aactgagatacacttacg 236  Q
    |||| || |||| |||||    
T  9460179 aactaagttacatttacg 9460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 38415497 - 38415602
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||||||| |  |||| |||  |||| |  ||||||| ||||||| ||||||||||||||  || ||||||||||||||| |||    
T  38415497 tggctagattcacacacattatgtatgaagaaatggagaatttggggttcgaatcctgacctctgcacaaattatccttgatagctaccaactgagctac 38415596  T
Q  230 acttac 235  Q
    ||||||    
T  38415597 acttac 38415602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 23894292 - 23894391
Alignment:
Q  136 agattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccct-gaccctgcacaaattatcactggtagctaccaactgagatacactta 234  Q
    |||||||| |||||||||| ||||||||| ||||||  || |||||||||||  ||||| |||||||||||  || ||| |||||| |||| ||||||||    
T  23894292 agattcacacacattatgtatagagaagtaggaaatctgaggttcgaaccctaaaccctacacaaattatccgtgatagttaccaaatgagctacactta 23894391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 54733274 - 54733384
Alignment:
Q  126 tttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctaccaactga 224  Q
    |||| ||||||||||||| |||||||||||| |||| ||| | ||| ||   |||||||||  ||| |||||||||| ||| ||||||||||||||||||    
T  54733274 tttagtggctagattcacacacattatgtgtggagaggtgaggaatccgtaattcgaaccccaaccactgcacaaatgatc-ctggtagctaccaactga 54733372  T
Q  225 gatacacttacg 236  Q
    | || |||||||    
T  54733373 gttatacttacg 54733384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 49479558 - 49479458
Alignment:
Q  135 tagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaa-ccctgaccctgcacaaattatcactggtagctaccaactgagatacactt 233  Q
    ||||||||| |||||||||||| ||||||| |||||||||   |||||| ||||  |||| || |||||||  ||| ||||||||||||||  |||||||    
T  49479558 tagattcacacacattatgtgtggagaagttggaaattcgggattcgaacccctacccctacataaattatttctgatagctaccaactgaactacactt 49479459  T
Q  234 a 234  Q
    |    
T  49479458 a 49479458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 17882247 - 17882356
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccctgcacaaattatcactggtagctaccaactgagataca 230  Q
    |||||||||| || |||||||||| | ||||||| |  ||| ||  |||||||||||| ||||||||||||||||  ||  |||||| ||||||  ||||    
T  17882247 tggctagatttacacacattatgt-tggagaagtagagaatccggggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactaca 17882345  T
Q  231 cttacgcgact 241  Q
    |||||| ||||    
T  17882346 cttacgggact 17882356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 21177025 - 21177142
Alignment:
Q  119 caagtaatttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccctgcacaaattatcactggtagctacc 218  Q
    ||||||||| | || ||||||| || |||||||||||| |||||||||| ||||||| ||||||||  |||||||| ||||||| || ||||||||||||    
T  21177025 caagtaattcattgactagatttacacacattatgtgtggagaagtggggaattcgaggttcgaactttgaccctgtacaaattgtctctggtagctacc 21177124  T
Q  219 aactgagatacacttacg 236  Q
    ||||||| || |||||||    
T  21177125 aactgaggtatacttacg 21177142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 9737585 - 9737678
Alignment:
Q  138 attcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagataca 230  Q
    |||||| |||||||||||||||||| | | |||||||| ||||||||||||| ||||||||| | |||| ||||||||||||||||||| ||||    
T  9737585 attcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctggtagctaccaactgagctaca 9737678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 38745295 - 38745407
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||| ||||| |||||||||| ||||||  ||||||| || || |||||||||||||||| |||||| | ||||||| || |||    
T  38745295 tggctagattcacacacattttgtgtggagaagtggggaattcggggttcgaatcccgacccctgcacaaattatccctggtaaccaccaactaagctac 38745394  T
Q  230 acttacgcgactt 242  Q
    | ||||| |||||    
T  38745395 atttacgggactt 38745407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 17002996 - 17002900
Alignment:
Q  137 gattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccct-gaccctgcacaaattatcactggtagctaccaactgagatacacttac 235  Q
    ||||||| |||||||||||| |||||||||| ||| ||   |||||||||  | ||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  17002996 gattcacacacattatgtgtggagaagtggggaatccg---ttcgaaccccagcccctgtacaaattatccctggtagctaccaactgagctacgcttac 17002900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 27100928 - 27101020
Alignment:
Q  145 cacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatacacttacg 236  Q
    |||||||||||| || |||||||||||  |  |||||||||| || |||||||||| | ||||||| |||||| ||||||| |||||||||||    
T  27100928 cacattatgtgtggaaaagtgggaaatctggagttcgaaccccgatccctgcacaagtcatcactgatagctaacaactgaaatacacttacg 27101020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 51829559 - 51829663
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaac-cctgaccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    |||||||||||||  ||||||||||| |||||||| | |||  |  |||||||| || |  ||||||||||| ||| ||||||||||||||||||| |||    
T  51829559 tggctagattcacatacattatgtgtggagaagtgaggaatctggggttcgaacaccagctcctgcacaaatgatc-ctggtagctaccaactgagctac 51829657  T
Q  230 acttac 235  Q
    ||||||    
T  51829658 acttac 51829663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 41259955 - 41259998
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcg 174  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||    
T  41259955 tggctagattcacacacattatgtgtggagaagtggggaattcg 41259998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 7950967 - 7950931
Alignment:
Q  200 attatcactggtagctaccaactgagatacacttacg 236  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  7950967 attatccctggtagctaccaactgagctacacttacg 7950931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 11988933 - 11988969
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtggg 167  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  11988933 tggctagattcacacacattatgtgtggagaagtggg 11988969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 21892527 - 21892630
Alignment:
Q  133 gctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatacac 231  Q
    ||||||||||| || | || |||| |||||||||| |||| |  |||||||||| || |||| || |||||||| ||||||| || |||||||| |||||    
T  21892527 gctagattcacacataataagtgtggagaagtggggaatttg-ggttcgaaccccgatccctccataaattatctctggtagttatcaactgagctacac 21892625  T
Q  232 ttacg 236  Q
    |||||    
T  21892626 ttacg 21892630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 49285007 - 49284975
Alignment:
Q  190 ccctgcacaaattatcactggtagctaccaact 222  Q
    |||||||||||||||| ||||||||||||||||    
T  49285007 ccctgcacaaattatctctggtagctaccaact 49284975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 51816058 - 51816022
Alignment:
Q  200 attatcactggtagctaccaactgagatacacttacg 236  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  51816058 attatccctggtagctaccaactgagctacacttacg 51816022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 55009622 - 55009522
Alignment:
Q  137 gattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctaccaactgagatacacttac 235  Q
    ||||||| |||||||||| | |||||||| ||||| ||  |||||||||| |  | || ||||||||||| ||  |||||||||| |||| |||||||||    
T  55009622 gattcacacacattatgtatggagaagtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagctaccaattgagctacacttac 55009523  T
Q  236 g 236  Q
    |    
T  55009522 g 55009522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 9198945 - 9199038
Alignment:
Q  145 cacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc--tgcacaaattatcactggtagctaccaactgagatacacttacg 236  Q
    |||||||||||| |||||||||||||||||| ||||||||||   |||  ||||||||||||| ||||||||||||||||||| ||||||||||    
T  9198945 cacattatgtgtggagaagtgggaaattcgaggttcgaaccccagcccgctgcacaaattatctctggtagctaccaactgagctacacttacg 9199038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 34319817 - 34319923
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| ||||||||||||||||||||| | ||| |   ||| ||| |||| ||| ||||||||||||| ||| ||||||||||||||| |||    
T  34319817 tggctagattcacacacattatgtgtagagaagtgaggaatccagggttagaatcctggcccctgcacaaattatccctgatagctaccaactgaggtac 34319916  T
Q  230 acttacg 236  Q
    |||||||    
T  34319917 acttacg 34319923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 31068899 - 31069001
Alignment:
Q  135 tagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgagatacactt 233  Q
    ||||||||| ||||||| |||| |||||||||| ||| ||  |||| ||| | ||||| | |||||||||||| || ||||||||||||||| |||||||    
T  31068899 tagattcacacacattaagtgtggagaagtggggaatccggagttcaaactccgacccctacacaaattatcaatgttagctaccaactgagctacactt 31068998  T
Q  234 acg 236  Q
    |||    
T  31068999 acg 31069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 37123662 - 37123551
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaa-ccctgaccctgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |  ||||||| |||  ||||| ||||||||||| ||| || |||| ||||||  |||    
T  37123662 tggctagattcacacacattatgtgtggagaagtgagaaatttggggttcgaatcccgaaccctacacaaattatccctgataactactaactgaactac 37123563  T
Q  230 acttacgcgact 241  Q
    ||| ||| ||||    
T  37123562 actaacgggact 37123551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 14368413 - 14368510
Alignment:
Q  126 tttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaact 222  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||||||  | ||||  | ||||||||  |||||||||||||||    
T  14368413 tttagtggctagattcacacacattatgtgtggagaagtggggaatccgtggttcgaaccccaacccctatataaattatccatggtagctaccaact 14368510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 34028143 - 34028097
Alignment:
Q  190 ccctgcacaaattatcactggtagctaccaactgagatacacttacg 236  Q
    ||||||| |||||||| ||||||||||| ||||||| ||||||||||    
T  34028143 ccctgcaaaaattatccctggtagctactaactgagctacacttacg 34028097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 44287897 - 44287861
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtggg 167  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  44287897 tggctagattcacacacattatgtgtggagaagtggg 44287861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 28300193 - 28300087
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||||||| | |||||||||| ||| ||  |||||||||| | ||| |||||||||||||| |||||||||||||||||| |||    
T  28300193 tggctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcacaaattatcattggtagctaccaactgagctac 28300094  T
Q  230 acttacg 236  Q
    || ||||    
T  28300093 acctacg 28300087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 42445872 - 42445770
Alignment:
Q  119 caagtaatttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctac 217  Q
    |||||| |||| ||||||||||||| ||||||||||||||| ||||||  |||||   ||||||||||||||| |||||||||||||| ||| |||||||    
T  42445872 caagtagtttagtggctagattcacacacattatgtgtagaaaagtggataattcagagttcgaaccctgaccgctgcacaaattatctctgatagctac 42445773  T
Q  218 caa 220  Q
    |||    
T  42445772 caa 42445770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 13147746 - 13147851
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccctgcacaaattatcactggtagctaccaactgagataca 230  Q
    ||||||||||||| ||||||||||||  ||||||| |||||| |  ||||||||   |   |||||||||||||||||||||||||||||||||| ||||    
T  13147746 tggctagattcacacacattatgtgtgaagaagtgtgaaatttggggttcgaacttcggttctgcacaaattatcactggtagctaccaactgagttaca 13147845  T
Q  231 cttacg 236  Q
    ||||||    
T  13147846 cttacg 13147851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 31441313 - 31441261
Alignment:
Q  190 ccctgcacaaattatcactggtagctaccaactgagatacacttacgcgactt 242  Q
    |||||| ||||||||||||||||||||||||||||| ||||| |||| |||||    
T  31441313 ccctgcgcaaattatcactggtagctaccaactgagctacacctacgggactt 31441261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 12959753 - 12959707
Alignment:
Q  190 ccctgcacaaattatcactggtagctaccaactgagatacacttacg 236  Q
    |||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  12959753 ccctgcacaagttatccctgatagctaccaactgagctacacttacg 12959707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 19756430 - 19756466
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtggg 167  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  19756430 tggctagattcacacacattatgtgtggagaagtggg 19756466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 30327773 - 30327657
Alignment:
Q  119 caagtaatttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaa-ccctgaccctgcacaaattatcactggtagctac 217  Q
    |||||| |||| ||||||||||||| || ||||||||| |||||||||  ||||||  ||||||| ||| | ||||||| |||||||| ||| |||||||    
T  30327773 caagtagtttagtggctagattcacacatattatgtgtggagaagtggcgaattcggggttcgaaccccggcccctgcataaattatctctgatagctac 30327674  T
Q  218 caactgagatacactta 234  Q
    |||||||| ||||||||    
T  30327673 caactgagctacactta 30327657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 24793580 - 24793486
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactga 224  Q
    |||||||||||||  ||||||||||||||||| ||||||||  |  ||||| |||| || |||||||||||||||| ||| ||||||||||||||    
T  24793580 tggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaactga 24793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 43406010 - 43406112
Alignment:
Q  135 tagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaac-cctgaccctgcacaaattatcactggtagctaccaactgagatacactt 233  Q
    |||| |||| |||||||||||| |||||||||  |||  || |||||||| || | || ||||||||||||| ||||||||||||||||||| |||||||    
T  43406010 tagactcacacacattatgtgtggagaagtggagaatctgaggttcgaactccggtccttgcacaaattatctctggtagctaccaactgagctacactt 43406109  T
Q  234 acg 236  Q
    |||    
T  43406110 acg 43406112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 31478693 - 31478796
Alignment:
Q  134 ctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaac-cctgaccctgcacaaattatcactggtagctaccaactgagatacact 232  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |||||||| || | || ||||||||||||| | ||| |||||||| |||| |||||     
T  31478693 ctagattcacacacattatgtgtagagaagtggagaatccgaagttcgaactccggcccttgcacaaattatctccggtggctaccaattgagctacaca 31478792  T
Q  233 tacg 236  Q
    ||||    
T  31478793 tacg 31478796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 20706607 - 20706506
Alignment:
Q  135 tagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctaccaactgagatacactt 233  Q
    ||||||||| ||||||| |||| ||||||||| ||||   | |||| |||| ||||| ||||||||||||||  |||||||||||||||||| |||| ||    
T  20706607 tagattcacacacattacgtgtggagaagtggaaaatctaaggttcaaaccttgacctctgcacaaattatcgttggtagctaccaactgagctacattt 20706508  T
Q  234 ac 235  Q
    ||    
T  20706507 ac 20706506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 11361414 - 11361326
Alignment:
Q  149 ttatgtgtagagaagtgggaaattcgatgttcgaaccct-gaccctgcacaaattatcactggtagctaccaactgagatacacttacg 236  Q
    |||||||| |||||||||| ||| | ||| |||||| || | ||||||||||||||||  ||||| |||||||||||| | ||||||||    
T  11361414 ttatgtgtggagaagtggggaatccaatgatcgaactctagcccctgcacaaattatccttggtaactaccaactgagctccacttacg 11361326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 32398319 - 32398219
Alignment:
Q  134 ctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgac-cctgcacaaattatcactggtagctaccaactgagatacact 232  Q
    ||||||||||  ||||||||||| |||||||||| ||| || ||||||||||| ||| |||||||| | |||| ||| || |||| ||| ||| ||||||    
T  32398319 ctagattcacatacattatgtgtggagaagtggggaatacgttgttcgaaccccgactcctgcacataatatccctgataactacaaaccgagttacact 32398220  T
Q  233 t 233  Q
    |    
T  32398219 t 32398219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 35963 - 35869
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactga 224  Q
    |||||||||||||  ||||||||||||||||| ||||||||  |  ||||| |||| || |||||||||||||||| ||| ||||||||||||||    
T  35963 tggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaactga 35869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 6922636 - 6922747
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaactgagatac 229  Q
    ||||||||||||| |||||||| ||| |||||||||| |||  |  ||| |||||| ||||| ||||||||||||   |||||||||||||||||  |||    
T  6922636 tggctagattcacacacattatatgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaactac 6922735  T
Q  230 acttacgcgact 241  Q
    ||||||| ||||    
T  6922736 acttacgggact 6922747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 20599412 - 20599500
Alignment:
Q  149 ttatgtgtagagaagtgggaaattcgatgttcgaaccctgaccct-gcacaaattatcactggtagctaccaactgagatacacttacg 236  Q
    |||||||| |||||||||| ||| ||  |||| ||||| |||||| ||||| | |||| ||||||||||||||||||| ||||||||||    
T  20599412 ttatgtgtggagaagtggggaatccggggttcaaaccccgacccttgcacataatatccctggtagctaccaactgagctacacttacg 20599500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 7326333 - 7326427
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactga 224  Q
    |||||| |||||| |||||||||||| |||||||||| |||     ||||||| || || |||||| ||||||||| ||||||||||||||||||    
T  7326333 tggctaaattcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctaccaactga 7326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 12606761 - 12606651
Alignment:
Q  126 tttactggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgac-cctgcacaaattatcactggtagctaccaactga 224  Q
    |||| ||||||||||||| |||||||| |||  ||||||||| |||  |  |||||||||  ||  ||| ||||||||||| || |||||||||||||||    
T  12606761 tttagtggctagattcacacacattatatgtgaagaagtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaactga 12606662  T
Q  225 gatacacttac 235  Q
    | |||||||||    
T  12606661 gctacacttac 12606651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 21023693 - 21023794
Alignment:
Q  136 agattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaacc-ctgaccctgcacaaattatcactggtagctaccaactgagatacactta 234  Q
    |||||||| |||||||||||| |||||||||  ||| ||  ||||||| | | |  ||| ||||||||||| |||||||||||||| |||| ||||||||    
T  21023693 agattcacacacattatgtgtggagaagtggagaatccggggttcgaatctcagttcctacacaaattatccctggtagctaccaattgagctacactta 21023792  T
Q  235 cg 236  Q
    ||    
T  21023793 cg 21023794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 2556244 - 2556334
Alignment:
Q  133 gctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgaccc-tgcacaaattatcactggtagctaccaact 222  Q
    |||| |||||| |||||||| |||  ||||||||  |||||||  ||||||| ||||||| | ||||| ||||||||| ||||||||||||    
T  2556244 gctaaattcacacacattatatgtgaagaagtggagaattcgaaattcgaactctgacccctacacaatttatcactgatagctaccaact 2556334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 35997084 - 35996980
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctgacc-ctgcacaaattatcactggtagctaccaactgagatac 229  Q
    |||||||| |||| ||||||||||||  ||||||||  ||||||   || ||||||  ||| |||||||||||||| ||| ||||||||||||||| |||    
T  35997084 tggctagagtcacacacattatgtgtgaagaagtggagaattcggaatttgaaccccaaccactgcacaaattatctctgatagctaccaactgagctac 35996985  T
Q  230 actta 234  Q
    |||||    
T  35996984 actta 35996980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 9705 - 9741
Alignment:
Q  131 tggctagattcacgcacattatgtgtagagaagtggg 167  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  9705 tggctagattcacacacattatgtgtggagaagtggg 9741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 23806 - 23700
Alignment:
Q  134 ctagattcacgcacattatgtgtagagaagtgggaaattcgatgttcgaaccctga-ccctgcacaaattatcactggtagctaccaactgagatacact 232  Q
    |||||||||| | ||||||||||  ||||||||| ||| | | ||||||||| ||| |||||| ||||||||   ||||| |||||||||||| ||||||    
T  23806 ctagattcacacgcattatgtgtgaagaagtggggaatcc-aggttcgaacc-tgatccctgcgcaaattatttatggtaactaccaactgagctacact 23709  T
Q  233 tacgcgact 241  Q
    |||| ||||    
T  23708 tacgagact 23700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University