View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_21 (Length: 329)
Name: NF10831_low_21
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_21 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 11719 - 11431
Alignment:
| Q |
18 |
tatagatgtcttctagaccatactcctgttgcagttaaagttcttcatcctgatgcacaacaaggaagctcacagtttcaacgagaggtaagcatatgat |
117 |
Q |
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| T |
11719 |
tatagatgtcttccagaccatactcccgttgcagttaaagttcttcatcctgatgcacaacaaggaagctcacagtttcaacgagaggtaagcatatgat |
11620 |
T |
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| Q |
118 |
aaaaactctaaccatatatgcgacataaattgagaagaataagctaattgatttgcacgggttgaatacgggtagttacctccgattattctgcttacat |
217 |
Q |
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| T |
11619 |
aaaaactctaaccatatatgcgacataaattgagaagaataagctaattgatttgcacgggttgaatacgggtagttacctccgattattctgcttacat |
11520 |
T |
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| Q |
218 |
attttctttctgctgcattaatgacctgaactatgggttaggacctatataaaagggttcaatgcaaacgtatattataataaatttgc |
306 |
Q |
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| T |
11519 |
attttctttctgctgcattaatgacctgaactatgggttaggacctatataaaagggttcaatgcaaacgtatattataagaaatttgc |
11431 |
T |
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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 1273316 - 1273442
Alignment:
| Q |
18 |
tatagatgtcttctagaccatactcctgttgcagttaaagttcttcatcctgatgcacaacaaggaagctcacagtttcaacgagaggtaagcatatgat |
117 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
1273316 |
tataaatgtcttctagaccatactcctgtcgcagttaaagttctccgtcctgatgcacaacaaggaaggtcccagtttcaacgagaggtaagcatatgat |
1273415 |
T |
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| Q |
118 |
aaaaa--ctctaaccatatatgcgaca |
142 |
Q |
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| T |
1273416 |
aaaaactctctaaccatatatgcgaca |
1273442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 50440383 - 50440299
Alignment:
| Q |
27 |
cttctagaccatactcctgttgcagttaaagttcttcatcctgatgcacaacaaggaagctcacagtttcaacgagaggtaagca |
111 |
Q |
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| T |
50440383 |
cttctggaccatacacctgttgcagtcaaggttctacgccccgatgcagcacaaggacgatcgcagtttcaacgcgaggtaagca |
50440299 |
T |
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