View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_29 (Length: 302)
Name: NF10831_low_29
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 17543911 - 17544119
Alignment:
| Q |
83 |
ttatatgtgtttaattatttcatttagagttgaaaacattatttacttttcaaaaatataatagaatacgccaacgaaaattgatgtagttaataagaac |
182 |
Q |
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| T |
17543911 |
ttatatgtgtttaattatttcatttagagttgaaaacattatttatttttcaaaaatataataaaatacgccaacgaaaattgatgtagttaataagaac |
17544010 |
T |
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| Q |
183 |
tcaacctatatcttacaagcatgcgagtttcaacctttatatcaatatgaattattcaatgataggtaaaatgtaacatcctcta-ttttttaatataat |
281 |
Q |
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| T |
17544011 |
tcaacctatatcttacaagcatgcgagtttcaacctttatatcaatatgaattatccaatgataggtaaaatgtaacatcctctatttttttaatataat |
17544110 |
T |
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| Q |
282 |
aaagcccta |
290 |
Q |
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| T |
17544111 |
aaagcccta |
17544119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 17543870 - 17543903
Alignment:
| Q |
17 |
attttttgtattacttcatctcaagaatataaat |
50 |
Q |
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| T |
17543870 |
attttttgtattacttcatctcaataatataaat |
17543903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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