View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_3 (Length: 476)
Name: NF10831_low_3
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 35111436 - 35110988
Alignment:
| Q |
18 |
ataatgaaacttgttatacctgttgaaagcacaatagtgtctttagcacggccgtccacaacaatcacaccactagagttacgactccgcccagtagaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35111436 |
ataatgaaacttgttatacctgttgaaagcacaatagtgtctttagcacggccgtccacaacaatcacaccactagagttacgactccgcccagtagaat |
35111337 |
T |
|
| Q |
118 |
gatggggagcaatccaccctagatcaccagtattcagccagccatccttatccaaggcctggtttgtagctaatggattctaatgcaataataggacacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35111336 |
gatggggagcaatccaccctagatcaccagtattcagccagccatccttatccaaggcctggtttgtagctaatggattctaatgcaataataggacacg |
35111237 |
T |
|
| Q |
218 |
taactatcatgacttcatccagaaaacatcaataaaatcacatgatgtgcctatgaattgtgaaatacgctacgcttatagactcctatacttttgacag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35111236 |
taactatcatgacttcatccagaaaacatcaataaaatcacatgatgtgcctatgaattgtgaaatacgctacgcttatagactcctatacttttgacag |
35111137 |
T |
|
| Q |
318 |
ggttgtttgaatatcatgtaaaaggtgtttgatgtttcatgaatgccaatgaaggttggtttaactatatgattgaacaacattgacaaaaaggtattgg |
417 |
Q |
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| T |
35111136 |
ggttgtttgaatatcatggaaaaggtgtttgatgtgtcatgaatgccaatgaaggttggtttaactatatgattgaacaacattgacaaaaaggtattgg |
35111037 |
T |
|
| Q |
418 |
gaaaggtttgtattttgataagcacattaccttgtagtatccattcatc |
466 |
Q |
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| T |
35111036 |
gaaaggtttgtattttgataagcacattaccttgtagtatccattcatc |
35110988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 38118689 - 38118870
Alignment:
| Q |
29 |
tgttatacctgttgaaagcacaatagtgtctttagcacggccgtccacaacaatcacaccactagagttacgactccgcccagtagaatgatggggagca |
128 |
Q |
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|||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||| ||| ||||||||||| ||||| ||||| |||| |||| |
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| T |
38118689 |
tgttctacctgatgaaagcacaatggtgtctttagcacggccttcaacaacaatcacaccaccagaattacgactccgtccagttgaatggtgggcagca |
38118788 |
T |
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| Q |
129 |
atccaccctagatcaccagtattcagccagccatccttatccaaggcctggtttgtagctaatggattctaatgcaataata |
210 |
Q |
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| T |
38118789 |
atccaacctatgtcaccagtatttagccagccatcactatcaatgacccgatttgtagctaaaggattctgatgcaagaata |
38118870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 38129025 - 38129207
Alignment:
| Q |
29 |
tgttatacctgttgaaagcacaatagtgtctttagcacggccgtccacaacaatcacaccactagagttacgactccgcccagtagaatgatggggagca |
128 |
Q |
| |
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|||| |||||| |||||||||||| |||||||||||||| || || |||||||||||||| | | | ||||||||||| |||| ||||| | || |||| |
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| T |
38129025 |
tgttctacctgatgaaagcacaatggtgtctttagcacgaccttcaacaacaatcacaccgccacaattacgactccgtccagatgaatggtaggcagca |
38129124 |
T |
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| Q |
129 |
atccaccctagatcaccagtattcagccagccatccttatccaaggcctggtttgtagctaatggattctaatgcaataatag |
211 |
Q |
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| T |
38129125 |
atccaacctatgtcaccagtattcagccagccatccttgtctatggcctgatttgtggctgaaggattctgatacaagaatag |
38129207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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