View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_32 (Length: 290)

Name: NF10831_low_32
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_32
NF10831_low_32
[»] chr1 (4 HSPs)
chr1 (1-271)||(8425169-8425439)
chr1 (1-151)||(30234256-30234406)
chr1 (192-263)||(30235361-30235432)
chr1 (150-195)||(30235004-30235049)
[»] chr5 (4 HSPs)
chr5 (1-263)||(22475936-22476202)
chr5 (109-263)||(26849095-26849238)
chr5 (1-85)||(26842290-26842378)
chr5 (231-263)||(15425483-15425515)
[»] chr3 (2 HSPs)
chr3 (1-263)||(1530512-1530778)
chr3 (161-258)||(26797819-26797915)
[»] chr4 (3 HSPs)
chr4 (192-263)||(5690095-5690166)
chr4 (150-193)||(25153751-25153794)
chr4 (214-263)||(25154144-25154193)
[»] chr7 (4 HSPs)
chr7 (10-151)||(39327811-39327952)
chr7 (196-260)||(39327292-39327356)
chr7 (150-195)||(39327668-39327713)
chr7 (150-195)||(39718781-39718826)
[»] chr2 (2 HSPs)
chr2 (192-263)||(29759042-29759113)
chr2 (150-195)||(29758696-29758741)
[»] chr8 (1 HSPs)
chr8 (161-260)||(8396719-8396817)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 8425169 - 8425439
Alignment:
Q  1 aatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8425169 aatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctgatctcaggaagaaggttttgccagctgtcatcgttc 8425268  T
Q  101 gccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425269 gtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgc 8425368  T
Q  201 tatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaat 271  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8425369 tatcactggaccaattggtaaggagtgtgctgatctttggcctaggattgcaaatgctgccaagtgccaat 8425439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 30234256 - 30234406
Alignment:
Q  1 aatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30234256 aatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctgatctcaggaagaaggttttgccagctgtcatcgttc 30234355  T
Q  101 gccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag 151  Q
    | ||| | ||||| ||||||| |||||| ||||||||||||||||| ||||    
T  30234356 gtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag 30234406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 30235361 - 30235432
Alignment:
Q  192 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
    ||||||||||||||| || ||||||| |||||  |||| |||||||||||||||||||||||||||||||||    
T  30235361 aggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaa 30235432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 30235004 - 30235049
Alignment:
Q  150 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235004 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 30235049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 22476202 - 22475936
Alignment:
Q  1 aatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatc 96  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||    
T  22476202 aatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaacctgatctcatgaagaaggttttgccagttgtcatc 22476103  T
Q  97 gttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggtt 196  Q
    ||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||    
T  22476102 gttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttcaaagataatgccggcgttattgtgaatcctaagggagaaatgaaaggtt 22476003  T
Q  197 ctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
    |||||||||||||||||||||| || | ||||| ||| |||||||||| ||||||||||||||||||    
T  22476002 ctgctatcactggaccaattggcaacgagtgtgctgagctttggcctatgattgcaagtgctgccaa 22475936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 26849095 - 26849238
Alignment:
Q  109 aagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactg 208  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||           ||||||||    
T  26849095 aagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg-----------tatcactg 26849183  T
Q  209 gaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
    ||||||||||||| |  |||| ||| |||||||||| ||||||||||||||||||    
T  26849184 gaccaattggtaatgaatgtgctgagctttggcctatgattgcaagtgctgccaa 26849238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26842290 - 26842378
Alignment:
Q  1 aatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgc 85  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26842290 aatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatacctgatctcaggaagaaggttttgc 26842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 15425483 - 15425515
Alignment:
Q  231 tgatctttggcctaggattgcaagtgctgccaa 263  Q
    |||| ||||||||||||||||||||||||||||    
T  15425483 tgatatttggcctaggattgcaagtgctgccaa 15425515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 1530512 - 1530778
Alignment:
Q  1 aatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatc 96  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||    
T  1530512 aatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatc 1530611  T
Q  97 gttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggtt 196  Q
    ||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||||  ||  |||||||||||||||||||||||||||||| ||    
T  1530612 gttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaagatt 1530711  T
Q  197 ctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
     |||||||||||||||||||||||| | ||||| ||| |||||||||| ||||||||||||||||||    
T  1530712 atgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaa 1530778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 26797915 - 26797819
Alignment:
Q  161 gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgct 258  Q
    |||||||||| ||||| |||| |||||||||||| |||||||| | ||| |||||||| |||| ||||| |||| | ||| |||||||||||||||||    
T  26797915 gtgttattgttaatccaaagg-agaaatgaaagggtctgctattagtggtccaattgggaaggagtgtgctgatttatggtctaggattgcaagtgct 26797819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 5690166 - 5690095
Alignment:
Q  192 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
    |||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  5690166 aggttccgctatcacaggaccaattggtaaggagtgtgctgatctttggcctaggattgcaagtgctgccaa 5690095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 25153751 - 25153794
Alignment:
Q  150 agataatgctggtgttattgtgaatcctaagggagaaatgaaag 193  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25153751 agataattctggtgttattgttaatcctaagggagaaatgaaag 25153794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 25154144 - 25154193
Alignment:
Q  214 attggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
    |||| ||||| || || |||||||||||||||||||||||||||||||||    
T  25154144 attgataaggagtatgctgatctttggcctaggattgcaagtgctgccaa 25154193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 39327952 - 39327811
Alignment:
Q  10 ccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgca 109  Q
    ||||||||||| | |||||||||||||||||| ||  ||||||||||||| ||||||||| | ||||||||  | || || | ||||||||| ||| | |    
T  39327952 ccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgta 39327853  T
Q  110 agccttggcgcccaaaggatggtgtcttcatgtacttcgaag 151  Q
    | || ||||||| |||||| ||||| ||||||||||||||||    
T  39327852 aaccatggcgccgaaaggacggtgttttcatgtacttcgaag 39327811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 39327356 - 39327292
Alignment:
Q  196 tctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgc 260  Q
    |||||||| ||||| |||||||  |||| ||||| |||||| |||||||||||||||||||||||    
T  39327356 tctgctattactggtccaattgcgaaggagtgtgctgatctatggcctaggattgcaagtgctgc 39327292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 39327713 - 39327668
Alignment:
Q  150 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 195  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||    
T  39327713 agataatgctggtgttattgttaatcccaaaggagaaatgaaaggt 39327668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 39718826 - 39718781
Alignment:
Q  150 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 195  Q
    ||||||||||||||||||||| ||||| || |||||||| ||||||    
T  39718826 agataatgctggtgttattgttaatcccaaaggagaaataaaaggt 39718781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 29759042 - 29759113
Alignment:
Q  192 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaa 263  Q
    |||||| | |||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  29759042 aggttccgttatcacaggaccaattggaaaggagtgtgctgatctttggcctaggattgcaagtgctgccaa 29759113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 29758696 - 29758741
Alignment:
Q  150 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758696 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 29758741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 8396817 - 8396719
Alignment:
Q  161 gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgc 260  Q
    |||||||||| ||||| |||| |||||||||||| ||| |||| ||||| | |||||| |||| ||||| |||| | ||| |||||||||||||||||||    
T  8396817 gtgttattgttaatccaaagg-agaaatgaaagggtctactattactggtcgaattgggaaggagtgtgctgatttatggtctaggattgcaagtgctgc 8396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University