View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_35 (Length: 263)

Name: NF10831_low_35
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_35
NF10831_low_35
[»] chr2 (1 HSPs)
chr2 (1-247)||(31623194-31623439)
[»] scaffold0284 (1 HSPs)
scaffold0284 (201-246)||(2980-3025)
[»] scaffold0114 (1 HSPs)
scaffold0114 (201-246)||(34534-34579)
[»] chr8 (3 HSPs)
chr8 (201-246)||(16221874-16221919)
chr8 (202-246)||(41529018-41529062)
chr8 (201-246)||(40114431-40114476)
[»] chr5 (3 HSPs)
chr5 (201-246)||(32259395-32259440)
chr5 (202-237)||(42631280-42631315)
chr5 (201-246)||(9022846-9022891)
[»] chr3 (1 HSPs)
chr3 (201-246)||(50239372-50239417)
[»] chr1 (2 HSPs)
chr1 (201-246)||(45920630-45920675)
chr1 (201-233)||(49878106-49878138)
[»] scaffold0211 (1 HSPs)
scaffold0211 (201-233)||(20612-20644)
[»] chr6 (1 HSPs)
chr6 (201-246)||(14211598-14211643)
[»] chr4 (1 HSPs)
chr4 (201-246)||(6552020-6552065)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 31623194 - 31623439
Alignment:
Q  1 aaggtctccaaccccgttggatgaaaatcaacgttttactgagtgtgtttaaatgtgtaagttgtcaattttaaaggaaagttgcttcaaaagtgcattt 100  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31623194 aaggtctccaaccccgttagatgaaaatcaacgttttaaagagtgtgtttaaatgtgtaagttgttaattttaaaggaaagttgcttcaaaagtgcattt 31623293  T
Q  101 ttgtttatactacaaacaaatggcttgcgnnnnnnnntcacaaatgcatatcgttttagcatgaatcggtgtaaaatcttgttttagttgaataaaggtg 200  Q
    || |||||||||||||||||||| |||||        |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  31623294 ttttttatactacaaacaaatggtttgcg-aaaaaaatcacaaatgcatatcggtttagcatgaatcggtgtaaaatcctgttttagttgaataaatgtg 31623392  T
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataatt 247  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  31623393 gttttatcccatgtttgaatttaactgacactagataaatcataatt 31623439  T

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Target: scaffold0284 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 2980 - 3025
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  2980 gttttatcccatgtttgaatttaactgacactagatacatcataat 3025  T

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Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 34579 - 34534
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  34579 gttttatcccatgtttgaatttaactgacactagatacatcataat 34534  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 16221874 - 16221919
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  16221874 gttttatcccatgtttgaatttaactgacactagatacatcataat 16221919  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 41529018 - 41529062
Alignment:
Q  202 ttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    |||||||||||||||||||||||||||||||||||| || |||||    
T  41529018 ttttatcccatgtttgaatttaactgacactagatacatcataat 41529062  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 40114431 - 40114476
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||    
T  40114431 gttttatcccatgtttgaatttaactgacactaaatacatcataat 40114476  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 32259395 - 32259440
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  32259395 gttttatcccatgtttgaatttaactgacactagatacatcataat 32259440  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 42631315 - 42631280
Alignment:
Q  202 ttttatcccatgtttgaatttaactgacactagata 237  Q
    ||||||||||||||||||||||||||||| ||||||    
T  42631315 ttttatcccatgtttgaatttaactgacattagata 42631280  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 9022891 - 9022846
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||||    
T  9022891 gttttataccatgtttgaatttaactgacactaaatacatcataat 9022846  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 50239417 - 50239372
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  50239417 gttttatcccatgtttgaatttaactgacactagatacatcataat 50239372  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 45920630 - 45920675
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||    
T  45920630 gttttatcccatgtttgaatttaactgacactaaatacatcataat 45920675  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 49878138 - 49878106
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacacta 233  Q
    |||||||||||||||||||||||||||||||||    
T  49878138 gttttatcccatgtttgaatttaactgacacta 49878106  T

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Target: scaffold0211 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 20612 - 20644
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacacta 233  Q
    |||||||||||||||||||||||||||||||||    
T  20612 gttttatcccatgtttgaatttaactgacacta 20644  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 14211598 - 14211643
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    ||||| |||||||||||||||||||| |||||||||| || |||||    
T  14211598 gttttgtcccatgtttgaatttaactaacactagatacatcataat 14211643  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 6552065 - 6552020
Alignment:
Q  201 gttttatcccatgtttgaatttaactgacactagatatattataat 246  Q
    |||||||| |||||||||||||||||||||||| ||| || |||||    
T  6552065 gttttatctcatgtttgaatttaactgacactacatacatcataat 6552020  T

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