View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_37 (Length: 259)
Name: NF10831_low_37
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32184709 - 32184460
Alignment:
| Q |
1 |
tcctcctttgatctcttcactttcaccacccatcactgttttcatctctgatatcttccttctttcacctctcatttcaatcactcaacaactttctcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184709 |
tcctcctttgatctcttcactttcaccacccatcactgttttcatctctgatatcttccttctttcacctctcatttcaatcactcaacaactttctcta |
32184610 |
T |
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| Q |
101 |
cctaactataccttgtttacttcttcagcttctatgttctccttcttttctcacttccctactcttgctcaatcaatatctgatgcttctgctgagattt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184609 |
cctaactataccttgtttacttcttcagcttccatgttctccttcttttctcacttccctactcttgctcaatcaatatctgatgcttctgctgagattt |
32184510 |
T |
|
| Q |
201 |
ctgagataccagttccaggtattgcattttcacctttaccatattcatct |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184509 |
ctgagataccagttccaggtattgcattttcacctttaccatattcatct |
32184460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 32177535 - 32177369
Alignment:
| Q |
8 |
ttgatctcttcactttcaccacccatcactgttttcatctctgatatcttccttctttcacctctcatttcaatcactcaacaactttctctacctaact |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| || | ||| |||| ||||||| | |||||||||| |||||||||| ||||| | |
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| T |
32177535 |
ttgatctcttcactttcaccacccatcactgtttttatctctgacatacttcttttttcccctctcaataaaatcactcaaaaactttctctccctaatt |
32177436 |
T |
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| Q |
108 |
ataccttgtttacttcttcagcttctatgttctccttcttttctcacttccctactcttgctcaatc |
174 |
Q |
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| T |
32177435 |
acatcttgaacacttcttcttctgctatgttctccttattctctcatttccctactcttgctcaatc |
32177369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 32177323 - 32177284
Alignment:
| Q |
211 |
agttccaggtattgcattttcacctttaccatattcatct |
250 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32177323 |
agttccaggcattccattttcacctttaccatattcatct |
32177284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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