View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_43 (Length: 252)
Name: NF10831_low_43
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 31709609 - 31709395
Alignment:
| Q |
19 |
cctataaccctatagtccctaatatatagcaacaaaccacatcacagtacttttttctttatttcctttatttcctttacagtatatgaagttgaggaca |
118 |
Q |
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| T |
31709609 |
cctataaccctatagtccctaatatatagcaacaaaccacatcacagtacttttttctttatttccttt-tttcctttacagtatatgaagttgaggaca |
31709511 |
T |
|
| Q |
119 |
aagtacttcatcacatgctgtttgaccattccttattactcatccaccccactttttcatttgctgaccaaaacaaacattgtccttattcacaacacta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31709510 |
aagtacttcatcacatgctgtttgaccattccttattactcatccaccccactttttcatttgctgaccaa----aacattgtccttattcacaacacta |
31709415 |
T |
|
| Q |
219 |
catcaccatttaaacccttc |
238 |
Q |
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|||||||||||||||||||| |
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| T |
31709414 |
catcaccatttaaacccttc |
31709395 |
T |
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