View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_44 (Length: 251)
Name: NF10831_low_44
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6567940 - 6568180
Alignment:
| Q |
1 |
aatgagttagaagcagcaaagagagattatttacaggcagcagttggcataacgaaaacaaacaagttaataattccaaagatacttgactggtttttac |
100 |
Q |
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| T |
6567940 |
aatgagttagaagcagcaaagagagattatttacaggcagcagttggcataacgaaaacaaacaagttaataattccaaagatacttgactggtttttac |
6568039 |
T |
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| Q |
101 |
ttgactttgcaaaggacttggaatctttgttggattgggtctgccttcagctacctgttgaactgagaaaggaagcagttgaatgccttgaaagaagggg |
200 |
Q |
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| T |
6568040 |
ttgactttgcaaaggacttggaatctttgttggattgggtctgccttcagctacctgttgaactgagaaaggaagcagttgaatgccttgaaagaagggg |
6568139 |
T |
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| Q |
201 |
aaggcagcccctttcacacatggtacatatgacggcctatg |
241 |
Q |
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| T |
6568140 |
aaggcagcctctttcacacatggtacatatgacggcctatg |
6568180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 34257772 - 34257574
Alignment:
| Q |
1 |
aatgagttagaagcagcaaagagagattatttacaggcagcagttggcataacgaaaacaaacaagttaataattccaaagatacttgactggtttttac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || || |||| || || ||||||||||| || ||||||| ||| | | || |||| ||||| |
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| T |
34257772 |
aatgagttagaagcagcaaagagagattatttacaagcttcaattggaattacaaaaacaaacaaaatactaattcccaagttgttggattggtatttac |
34257673 |
T |
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| Q |
101 |
ttgactttgcaaaggacttggaatctttgttggattgggtctgccttcagctacctgttgaactgagaaaggaagcagttgaatgccttgaaagaaggg |
199 |
Q |
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| T |
34257672 |
tagattttgcaaaggaccttgattctttattggactggatttgtctccaattaccagatgaaataagaaaccaagcagttaaatgccttgaaggaaggg |
34257574 |
T |
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