View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_46 (Length: 251)

Name: NF10831_low_46
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_46
NF10831_low_46
[»] chr3 (16 HSPs)
chr3 (9-169)||(37742738-37742898)
chr3 (1-169)||(44380259-44380427)
chr3 (1-142)||(47426355-47426496)
chr3 (1-92)||(50934505-50934596)
chr3 (1-167)||(33509685-33509851)
chr3 (1-58)||(32319474-32319531)
chr3 (1-169)||(47186180-47186349)
chr3 (1-58)||(10179872-10179929)
chr3 (19-169)||(17466296-17466446)
chr3 (3-92)||(31187145-31187234)
chr3 (4-165)||(35094554-35094717)
chr3 (1-148)||(39498689-39498835)
chr3 (1-92)||(42664678-42664769)
chr3 (119-169)||(19619221-19619271)
chr3 (5-92)||(34029366-34029453)
chr3 (1-58)||(10018675-10018732)
[»] chr1 (11 HSPs)
chr1 (1-169)||(2569042-2569209)
chr1 (1-167)||(29119324-29119490)
chr1 (1-165)||(32676141-32676305)
chr1 (1-169)||(46435463-46435619)
chr1 (1-92)||(8809715-8809806)
chr1 (1-89)||(25161314-25161402)
chr1 (9-145)||(8462141-8462277)
chr1 (1-60)||(7214518-7214577)
chr1 (129-168)||(36771529-36771568)
chr1 (1-45)||(16679821-16679864)
chr1 (5-67)||(35998261-35998323)
[»] chr6 (7 HSPs)
chr6 (1-169)||(1211842-1212010)
chr6 (1-169)||(5403874-5404042)
chr6 (1-169)||(32644836-32645002)
chr6 (1-58)||(11753172-11753229)
chr6 (125-169)||(10503257-10503301)
chr6 (1-92)||(34245572-34245663)
chr6 (1-89)||(11113561-11113649)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-169)||(13003-13172)
[»] chr2 (11 HSPs)
chr2 (1-168)||(34392080-34392247)
chr2 (10-169)||(23863801-23863958)
chr2 (1-169)||(7381697-7381864)
chr2 (170-238)||(2059309-2059378)
chr2 (1-170)||(37357914-37358087)
chr2 (1-92)||(21603964-21604055)
chr2 (17-169)||(25275620-25275771)
chr2 (19-169)||(4779608-4779758)
chr2 (3-169)||(4775641-4775808)
chr2 (106-169)||(21606149-21606212)
chr2 (27-169)||(41095784-41095926)
[»] chr5 (16 HSPs)
chr5 (1-169)||(33858536-33858704)
chr5 (1-168)||(19357261-19357427)
chr5 (5-169)||(11607532-11607696)
chr5 (12-169)||(33271630-33271787)
chr5 (1-169)||(1826264-1826432)
chr5 (1-169)||(38010611-38010780)
chr5 (1-92)||(39570118-39570209)
chr5 (1-92)||(9827793-9827884)
chr5 (1-92)||(13015386-13015477)
chr5 (1-92)||(29989967-29990058)
chr5 (1-67)||(13086758-13086824)
chr5 (1-92)||(13478120-13478211)
chr5 (100-163)||(10292976-10293039)
chr5 (1-92)||(13421085-13421176)
chr5 (51-145)||(42148201-42148295)
chr5 (133-169)||(9827903-9827939)
[»] chr4 (16 HSPs)
chr4 (5-169)||(12473713-12473877)
chr4 (5-169)||(12528122-12528286)
chr4 (1-163)||(35869575-35869737)
chr4 (5-152)||(21260803-21260950)
chr4 (1-144)||(33249397-33249540)
chr4 (1-169)||(22343342-22343510)
chr4 (2-169)||(51811920-51812087)
chr4 (1-167)||(52910050-52910215)
chr4 (1-169)||(55590487-55590644)
chr4 (1-92)||(52012783-52012874)
chr4 (108-169)||(35781021-35781082)
chr4 (100-169)||(1796654-1796723)
chr4 (3-82)||(34829168-34829247)
chr4 (1-55)||(49998487-49998541)
chr4 (27-86)||(1796163-1796222)
chr4 (5-92)||(9799438-9799525)
[»] chr8 (8 HSPs)
chr8 (1-169)||(24337828-24337996)
chr8 (1-163)||(41179567-41179729)
chr8 (1-169)||(11254026-11254193)
chr8 (4-146)||(4708328-4708470)
chr8 (3-170)||(18168392-18168560)
chr8 (3-170)||(18631949-18632117)
chr8 (1-92)||(1514808-1514899)
chr8 (1-67)||(32825935-32826001)
[»] chr7 (6 HSPs)
chr7 (1-173)||(48250159-48250333)
chr7 (1-169)||(35341541-35341709)
chr7 (1-169)||(48072394-48072560)
chr7 (20-169)||(32694568-32694717)
chr7 (1-89)||(31306951-31307040)
chr7 (20-92)||(40893116-40893189)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-169)||(34199-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-169)||(11200-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (1-45)||(23098-23142)
scaffold0263 (33-92)||(23174-23233)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-92)||(73095-73168)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 37742738 - 37742898
Alignment:
Q  9 attaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgt 108  Q
    ||||||||||||||||||||||  ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||       |||| ||||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgt 37742837  T
Q  109 gccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742838 gccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatcc 37742898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 44380259 - 44380427
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||| |||  ||||||||||||||||||       |    
T  44380259 tgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatactttttta 44380358  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||  ||||| ||||||| |||||||||||||||||||| |||||||||| |||||    
T  44380359 aagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatcc 44380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 47426355 - 47426496
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||   |||||||||||||||||       |    
T  47426355 tgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatattttttta 47426454  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtata 142  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  47426455 aagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 50934505 - 50934596
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||  ||||| ||||||||||||    
T  50934505 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 33509685 - 33509851
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||| ||| |||||||  |||| ||||||||||||||||||||| |||| |||| |||   |||||||||||||| ||       |    
T  33509685 tgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttta 33509784  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctat 167  Q
    |||| |||||||| ||| ||||| ||||| | ||||| |||||||||||||  ||||||||||||||    
T  33509785 aaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32319531 - 32319474
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccaccta 58  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32319531 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 32319474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 47186180 - 47186349
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata-nnnnnnn 99  Q
    ||||||||||||||||||||||| ||||||  |||||||||| |||||||||||| || ||||||||| |||  ||| ||||||||||||||            
T  47186180 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 47186279  T
Q  100 aaagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||||||||| ||| |||   |||||||  |||| |||||| ||| ||| ||||||||||||||||    
T  47186280 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 47186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10179929 - 10179872
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccaccta 58  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  10179929 tgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccaccta 10179872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 17466296 - 17466446
Alignment:
Q  19 caatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggt 118  Q
    ||||||||||||  ||||| ||||||||||||| |||||||||||||||| |||  |||| |||| ||||||||       ||||||| ||||||||       
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatatttttttaaagggtatgccacgtacc 17466395  T
Q  119 acattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||| | ||| || ||||||||||||||||||| | ||||||| || |||||    
T  17466396 acaatctaactgagcaatggtatataccattacggtacacaaatgttatcc 17466446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 31187234 - 31187145
Alignment:
Q  3 tgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| || ||||||||| |||  |||| |||||||||||||    
T  31187234 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 35094554 - 35094717
Alignment:
Q  4 gtaccattaaggtaccaatggtatatactattggccaatta--gagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaa 101  Q
    |||||||||| |||||| |||||||||| |||| | |||||  |||| ||||||||| ||||||||| |||  |||  |||||||||||||       ||    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatatttttttaa 35094653  T
Q  102 agggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgct 165  Q
    ||| |||| ||||||  ||||| ||||||| ||||| || ||||||||||| ||||||| ||||    
T  35094654 aggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 39498835 - 39498689
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||| ||||||||| |||||| |||||| |||||| |||||| |||||||| ||||||  |||  |||  ||||||| |||||       |    
T  39498835 tgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata-attttta 39498737  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccat 148  Q
    |||| |||||||||||  ||||| |||||| ||||| |||||||||||    
T  39498736 aaggatgtgccacgtgacacattctaattgagcaatagtatataccat 39498689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 42664678 - 42664769
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||| | ||||||  |||| ||||| |||||||||||| || ||||||||  |||  |||| |||||||||||||    
T  42664678 tgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 19619221 - 19619271
Alignment:
Q  119 acattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||||    
T  19619221 acattttaattgggcaatggtatataccattatggtacacatgtgctatcc 19619271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 34029453 - 34029366
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||| ||||||  ||||  |||| |||||||||||| ||  |||||||| |||  |||| |||||||||||||    
T  34029453 taccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10018732 - 10018675
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccaccta 58  Q
    ||||||||||||| ||||||||| ||||||| ||||| |||| | |||||||||||||    
T  10018732 tgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccaccta 10018675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2569042 - 2569209
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |    
T  2569042 tgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tttttta 2569140  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||| |||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||||||    
T  2569141 aagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatcc 2569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29119490 - 29119324
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||   |||||||||||||||||       |    
T  29119490 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatattttttta 29119391  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctat 167  Q
    ||||||||||||| ||| ||||| |||||||||||| ||||||||| ||||| ||||||| ||||||    
T  29119390 aagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 32676141 - 32676305
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||||| ||||||||| |||  ||||||||||||||||||       |    
T  32676141 tgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatattttttta 32676240  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgct 165  Q
    |||  |||||||| ||| ||| | ||||||| |||||||||||||||||||  ||||||| ||||    
T  32676241 aagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 46435619 - 46435463
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||            |||   |||||||||||||||||       |    
T  46435619 tgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct------------ttatagatgctttatttgatatatattttta 46435532  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||| ||| ||  ||||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  46435531 aagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctatcc 46435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 8809806 - 8809715
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| || ||||||||| |||  |||| |||||||||||||    
T  8809806 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25161314 - 25161402
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgat 89  Q
    ||||||||||||| ||  ||||||||||||| |||| ||||||| ||||||||||||| ||||||||| |||  |||| ||||||||||    
T  25161314 tgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 8462141 - 8462277
Alignment:
Q  9 attaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgt 108  Q
    ||||| ||||||||||||||||  ||||  |||||| ||||||||||||| ||||||||  |||  |||| ||||||| |||||       |||||| ||    
T  8462141 attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgt 8462240  T
Q  109 gccacgtggtacattataattgggcaatggtatatac 145  Q
    ||||||||  ||||| ||||||| |||||||||||||    
T  8462241 gccacgtgacacattttaattggacaatggtatatac 8462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7214577 - 7214518
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatc 60  Q
    |||||||||||||||||| ||| ||||||| |||||| ||||||||||||| ||||||||    
T  7214577 tgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatc 7214518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 36771529 - 36771568
Alignment:
Q  129 tgggcaatggtatataccattatgttacacaagtgctatc 168  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  36771529 tgggcaatggtatataccattatattacacaagtgctatc 36771568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16679864 - 16679821
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattag 45  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  16679864 tgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 35998261 - 35998323
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgtta 67  Q
    ||||||||||||||||||| ||||||  ||||   ||| |||||||||||| |||||||||||    
T  35998261 taccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgtta 35998323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1212010 - 1211842
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||| ||| | |||||||||||||||||       |    
T  1212010 tgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatattttttta 1211911  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||| |||||    
T  1211910 aagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatcc 1211842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 5404042 - 5403874
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||| ||||||||||| |||||| || ||||||| ||||||||| ||||||||| |||   ||| |||||||||||||       |    
T  5404042 tgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatattttttta 5403943  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||  ||| ||  ||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  5403942 aagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatcc 5403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 32645002 - 32644836
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||| || | || |||||||  ||||||||||||  ||||| ||||||  |||||||| |||  ||| ||||||||| ||||       |    
T  32645002 tgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttactttaa-aatactttatttgttatattttttta 32644904  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||| || |||| | ||||||  |||||||||||||||||||| ||||||||||||||||    
T  32644903 aagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctatcc 32644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11753172 - 11753229
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccaccta 58  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  11753172 tgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccaccta 11753229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 10503301 - 10503257
Alignment:
Q  125 taattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||    
T  10503301 taattggacaatggtatataccattatggtacacaagtgctatcc 10503257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34245572 - 34245663
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    |||||||||||||||||  |||| ||||||  |||| ||||| | |||||||||| || ||||||||| |||  ||| ||||||||||||||    
T  34245572 tgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11113561 - 11113649
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgat 89  Q
    ||||||||||||||||||||||| ||||||  |||| | ||| |||||||| ||| ||  |||||||| ||   | |||||||||||||    
T  11113561 tgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13172 - 13003
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||| ||| | |||||||||||||||||       |    
T  13172 tgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatattttttta 13073  T
Q  101 aaggg-tgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| |||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  13072 aagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatcc 13003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 34392247 - 34392080
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||  ||||||||||||||||||       |    
T  34392247 tgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatattttttta 34392148  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatc 168  Q
    ||||||||||||| ||| ||| | ||||||| |||||||||||||||||||| |||||||||||||||    
T  34392147 aagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 23863958 - 23863801
Alignment:
Q  10 ttaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtg 109  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||| ||||||||| |||  ||||||||||||||||||       ||||||||||    
T  23863958 ttaaggtaccaatggtatat--tattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  110 ccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||| ||||| ||||||| ||||| |||||| ||||||| ||||| ||||||||||    
T  23863860 ccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctatcc 23863801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 7381697 - 7381864
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||  ||| ||||||||||||||       |    
T  7381697 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata-tttttta 7381795  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| |||| || |||  ||||| |||||||||||| ||||||||||||||  ||| ||||| ||||||    
T  7381796 aaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagttctatcc 7381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 2059378 - 2059309
Alignment:
Q  170 tgtattgacatggttgtgtattatgtcaaatagcatggt-tgtgtaacatgttcactcctttcgtggtct 238  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  2059378 tgtattgacatggttgtgtattatgtcaaatagcatggtgtatgtaacatgttcactcctttcgtggtct 2059309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 37358087 - 37357914
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgata----tannnn 96  Q
    |||||| |||||||||||||||| ||||||| |||| | |||||||||||| |||||||||||||||| |||  |||||||||||| |||    |         
T  37358087 tgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatatttttttttt 37357988  T
Q  97 nnnaaagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcct 170  Q
       |||   |||||||||||  ||||| ||||||| ||||||||||||| |||||| |||||||||||||||||    
T  37357987 tttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcct 37357914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 21603964 - 21604055
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||  |||||| ||||||||| |||  |||| |||||||||||||    
T  21603964 tgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 25275771 - 25275620
Alignment:
Q  17 accaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtg 116  Q
    |||||| || ||||| ||||  ||||||  |||||||||||||||||||||| ||   ||| ||||||||||||||       ||||| |||||||||||    
T  25275771 accaatagtttatacgattgatcaattattgtgtgccacctatcaatgttactttta-aatactttatttgatatacttttttaaaggatgtgccacgtg 25275673  T
Q  117 gtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
     |||||| ||||||| ||||| |||||||||||||| |||| |||||||||||    
T  25275672 atacattctaattggacaatgatatataccattatgatacagaagtgctatcc 25275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 4779608 - 4779758
Alignment:
Q  19 caatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggt 118  Q
    |||| |||||||| ||||  || ||| |||||||| |||| ||||||||| |||  ||| ||||||||||||||       ||||| |||| ||||||      
T  4779608 caatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgac 4779707  T
Q  119 acattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||| |||||    
T  4779708 acattctaattggacaatggtatataccattatgatacacaagtgttatcc 4779758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 4775641 - 4775808
Alignment:
Q  3 tgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaat-gctttatttgatatannnnnnnaa 101  Q
    |||||||||||| |||||||| |||||| ||||||||||||||| |||  || ||| |||| |||| |||  ||| | ||||||| |||||       ||    
T  4775641 tgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatttttttaa 4775740  T
Q  102 agggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||| |||||||| ||| ||| | ||||||| |||||||||||||||||||| ||||||| || |||||    
T  4775741 aggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatcc 4775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 21606149 - 21606212
Alignment:
Q  106 tgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||||| |||| |||||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctatcc 21606212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 41095926 - 41095784
Alignment:
Q  27 tatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggtacattata 126  Q
    ||||| ||||| |||||||||||  ||||||| ||||||||| |||  |||||||||||||||| |       ||| ||| |||||| ||| |||   ||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  127 attgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    | ||| |||||||||||||||||||| |||  |||||||||||    
T  41095826 aatggccaatggtatataccattatggtacctaagtgctatcc 41095784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33858704 - 33858536
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||| |||||||  |||| ||||||| ||||||||||||| ||||||||| |||  |||| |||||||||||||       |    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 33858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 19357427 - 19357261
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||  ||||||||||||||||||       |    
T  19357427 tgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata-tttttta 19357329  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatc 168  Q
    |||| ||| |||||||  ||||| ||||||| ||||| |||||||||||||| |||||||||||||||    
T  19357328 aaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 11607696 - 11607532
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||| |||| |||  |||| |||||||||||||       |||||    
T  11607696 taccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatacttttttaaagg 11607597  T
Q  105 gtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||| |  ||||| ||||||| |||||||||||| ||||||| ||||||||||||||||    
T  11607596 gtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcc 11607532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 33271630 - 33271787
Alignment:
Q  12 aaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgcc 111  Q
    |||||||||||| ||||||  ||||||||||||||||||| || ||||||||||||| | |  ||||||||||||||||||       ||||| || |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  112 acgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||| ||||| |||||||||||| ||||||||||||||| |||| |||||||||||    
T  33271730 acgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcc 33271787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 1826264 - 1826432
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||| |||| |||| ||    |||||||||||||||||       |    
T  1826264 tgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatattttttta 1826363  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||  |||||||| ||| ||||| ||||||  ||||| |||||| ||||||| |||||||||| |||||    
T  1826364 aagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgatatcc 1826432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 38010780 - 38010611
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata-nnnnnnn 99  Q
    ||||||||||||||||||||||| ||||||  |||||||||| |||||||||||| || ||||||||| |||  ||| ||||||||||||||            
T  38010780 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 38010681  T
Q  100 aaagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||||||||| ||| |||   |||||||  |||| |||||| ||| ||| ||||||||||||||||    
T  38010680 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 38010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 39570209 - 39570118
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    |||||| |||||| ||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||  |||| |||||||||||||    
T  39570209 tgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata 39570118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9827793 - 9827884
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    |||||||||||||||||||||||||||||||  || | |||||||||||| ||||||| |||| |||| |||  |||  |||||||||||||    
T  9827793 tgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13015386 - 13015477
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| || ||||||||| |||  |||  |||||||||||||    
T  13015386 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 29989967 - 29990058
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||| ||||| ||||||  |||| ||||| |||||||||||| || ||||||||| |||  |||| |||||||||||||    
T  29989967 tgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13086758 - 13086824
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgtta 67  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| || ||||||||    
T  13086758 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13478211 - 13478120
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||| ||||||| ||||||  |||| ||||| |||||||||||| || || |||||| |||  |||  |||||||||||||    
T  13478211 tgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 10292976 - 10293039
Alignment:
Q  100 aaagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtg 163  Q
    |||||||||||||||||| |||   ||||||| ||||| |||||| ||||||| ||||||||||    
T  10292976 aaagggtgtgccacgtggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13421176 - 13421085
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||| ||||| ||||||  ||||  |||| |||||||  ||  |||||||||||| |||  |||||||||||| |||||    
T  13421176 tgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 42148201 - 42148295
Alignment:
Q  51 gccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggtacattataattgggcaatggtatatac 145  Q
    |||||||| ||||||||| |||  |||| |||||||||||||       ||||||||| |||||| | ||||| ||||||  |||||||||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatatac 42148295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 9827903 - 9827939
Alignment:
Q  133 caatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||||||| |||||||||| |||||    
T  9827903 caatggtatataccattatggtacacaagtgttatcc 9827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 12473713 - 12473877
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||   |||||||||||||||||       |||||    
T  12473713 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagg 12473812  T
Q  105 gtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||| ||  ||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  12473813 gtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 12528122 - 12528286
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||   |||||||||||||||||       |||||    
T  12528122 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagg 12528221  T
Q  105 gtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||| ||  ||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  12528222 gtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35869737 - 35869575
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||| |||||||||  ||  |||| |||||||||||||       |    
T  35869737 tgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatactttttta 35869638  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtg 163  Q
    ||||||||||||||||  ||||| ||||||  |||||||||||||||||||| || |||||||    
T  35869637 aagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 21260803 - 21260950
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||| |||||| ||||||||| |||  |||| |||||||||||||       |||||    
T  21260803 taccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatatttttttaaagg 21260902  T
Q  105 gtgtgccacgtggtacattataattgggcaatggtatataccattatg 152  Q
    ||||||||| ||| ||||| |||||||| |||| ||||||||||||||    
T  21260903 gtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33249540 - 33249397
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| |||  ||||||||||||||||||       |    
T  33249540 tgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatattttta 33249441  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatata 144  Q
    ||||||||||||| ||| ||| | |||||| |||||| ||||||    
T  33249440 aagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 22343342 - 22343510
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||| ||||||||||||  |||| |||||||||||||| || ||||||||||||| |||  ||||||||||||||||||       |    
T  22343342 tgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatattatttta 22343441  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| |||||||| ||  ||||| ||||||  ||||| |||||||||||||| |||||| ||| |||||    
T  22343442 aaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgatatcc 22343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 51811920 - 51812087
Alignment:
Q  2 gtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaa 101  Q
    |||||||||||||||| ||| | |||||| ||||||||||||||||| ||||||||| ||||||||| |||  |||  ||| |||||||||       ||    
T  51811920 gtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatatttttttaa 51812019  T
Q  102 agggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||| |||  ||||| |||||||  ||||||||||||||||||| || ||||||| |||||    
T  51812020 agggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttatcc 51812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 52910215 - 52910050
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||| | |||||||||| ||||||| |||||||||||| ||||||||||||| |||| |||| |||  |||||||||||||||| |       |    
T  52910215 tgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata-aaaaaatta 52910117  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctat 167  Q
    || ||| |||||||||| |||   ||||||  |||||||||||||||| ||| |||| |||||||||    
T  52910116 aaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 55590487 - 55590644
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||  ||||  |||||| |||||| |||||| |||||||||           |||||||||||||       |    
T  55590487 tgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttac-----------tttatttgatatactttttta 55590575  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| |||||||||||  ||||| |||||||||||||| ||||||||||||| ||| ||||||||||||    
T  55590576 aaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctatcc 55590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 52012783 - 52012874
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| | |||||||||| || ||||||||| |||  |||| |||||||||||||    
T  52012783 tgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 35781021 - 35781082
Alignment:
Q  108 tgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||| |||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtgatatcc 35781082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 1796654 - 1796723
Alignment:
Q  100 aaagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| |||| ||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| |||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatcc 1796723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 34829247 - 34829168
Alignment:
Q  3 tgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgcttt 82  Q
    ||||| ||||||||||||||| ||||||  | |||||||||| |||||| |||||| ||||||||| |||  ||||||||    
T  34829247 tgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49998487 - 49998541
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccac 55  Q
    ||||||||||||||||||||||  ||||||  ||||||||||||| |||||||||    
T  49998487 tgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 1796163 - 1796222
Alignment:
Q  27 tatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttattt 86  Q
    ||||| |||||||||||| | ||||||||||||||||||||| |||  |||| |||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgttactttataaatgttttattt 1796222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 9799525 - 9799438
Alignment:
Q  5 taccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||| ||||||  |||| ||||  ||| |||||||| || ||||||||| |||  |||| ||||||| |||||    
T  9799525 taccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 24337996 - 24337828
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||| ||||||||| ||||||||||||| || || |||||||||||||||| ||| ||||||||| |||   |||||||||||||||||       |    
T  24337996 tgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatattttta 24337897  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||| | | ||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  24337896 aagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 24337828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 41179729 - 41179567
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||| ||||||  |||||||||||| |||||| |||||| | ||||||| |||  |||| ||||||| |||||       |    
T  41179729 tgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatattttttta 41179630  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtg 163  Q
    | || |||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  41179629 atggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 11254193 - 11254026
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||  |||||||| ||||||  |||| ||| ||| ||| | ||||||| ||||||||| |||  |||| |||||||||||||       |    
T  11254193 tgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacattttta 11254095  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||  ||||| ||| || ||||||||||||||||||||| ||||||| ||||||||    
T  11254094 aagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 4708470 - 4708328
Alignment:
Q  4 gtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaag 103  Q
    |||||| |||||||||||||| |||||  ||  |||||||| |||||| |||||| ||||||||| |||  |||| |||||||||||||       ||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  104 ggtgtgccacgtggtacattataattgggcaatggtatatacc 146  Q
    |||||||||||||| ||||| ||||| ||||||||||| ||||    
T  4708370 ggtgtgccacgtggcacattctaattaggcaatggtatttacc 4708328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 18168392 - 18168560
Alignment:
Q  3 tgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata-nnnnnnnaa 101  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||| ||||||| |||| |||| |||  ||| ||||||||||||||        ||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  102 agggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcct 170  Q
    ||| |||||||||||  ||| | ||||| || |||  |||||||||||||| ||||||  |||||||||    
T  18168492 aggatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacacagatgctatcct 18168560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 18631949 - 18632117
Alignment:
Q  3 tgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata-nnnnnnnaa 101  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||| ||||||| |||| |||| |||  ||| ||||||||||||||        ||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  102 agggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcct 170  Q
    ||| |||||||||||  ||| | ||||| || |||  |||||||||||||| ||||||  |||||||||    
T  18632049 aggatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacacagatgctatcct 18632117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1514808 - 1514899
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| ||||||  ||||  |||| ||||||| |||| || ||||||||| |||  |||| |||||||||||||    
T  1514808 tgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32826001 - 32825935
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgtta 67  Q
    ||||||||||||| ||| ||||| | ||||| |||||||||||||||| || ||| |||||||||||    
T  32826001 tgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgtta 32825935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 48250159 - 48250333
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||| ||||||||| |||   ||||||||||||||||        |    
T  48250159 tgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatattttttttta 48250258  T
Q  101 aagggtgtgc--cacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcctgta 173  Q
    |||||| |||  || |||  ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  48250259 aagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcctgta 48250333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 35341541 - 35341709
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||| ||||||||| |||  |||| |||||||||||||       |    
T  35341541 tgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 35341640  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||  ||||| ||||||| ||||| |||||| ||||||| || | ||||| |||||    
T  35341641 aagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggtagataagtgttatcc 35341709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 48072394 - 48072560
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||| |||||||||||||| |||||  | ||||  ||||||||||||||||| | |||||||||  |||  |||  |||||||||| ||       |    
T  48072394 tgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtattttttta 48072491  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  48072492 aagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 48072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 32694717 - 32694568
Alignment:
Q  20 aatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggta 119  Q
    |||| ||||||| |||||  ||||||||||| ||| ||||||||||||| |||  ||| ||||||||||||||       |||||||||||||||||  |    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgaca 32694618  T
Q  120 cattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||||| |||||||||||||||||||||  ||||||||||||||||    
T  32694617 cattctaattaggcaatggtatataccattatagtacacaagtgctatcc 32694568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31307040 - 31306951
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaatt-agagtgtgccacctatcaatgttacattaccaatgctttatttgat 89  Q
    ||||||||||||| ||| ||||| ||||||  |||| |||||| | ||||||| ||||| ||||||||| |||  |||||||||||||||    
T  31307040 tgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 40893189 - 40893116
Alignment:
Q  20 aatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgc-tttatttgatata 92  Q
    |||||||||||| ||||| |||||||| |||  || ||||||||||||| |||  ||||| |||||||||||||    
T  40893189 aatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 34199 - 34365
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||| |||  |||  |||||||||||||       |    
T  34199 tgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata-tttttta 34297  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||| ||||||  ||||| |||||||  |||| |||||||| ||||| ||||||| ||||||||    
T  34298 aagggtgtgtcacgtgacacattctaattggataatgttatatacc-ttatggtacacaaatgctatcc 34365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11200 - 11367
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||  |||||||| ||||||  |||| ||| ||| ||| | ||||||| ||||||||| |||  |||| |||||||||||||       |    
T  11200 tgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacattttta 11298  T
Q  101 aagggtgtgccacgtggtacattataattgggcaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||  ||||| ||| || ||||||||||||||||||||| ||||||| ||||||||    
T  11299 aagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23098 - 23142
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatatactattggccaattag 45  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  23098 tgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 23233 - 23174
Alignment:
Q  33 attggccaattagagtgtgccacctatcaatgttacattaccaatgctttatttgatata 92  Q
    |||||||||||||||||||||||||| |||| |||| |||  |||  |||||||||||||    
T  23233 attggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 73095 - 73168
Alignment:
Q  20 aatggtatatactattggccaattagagtgtgccacctatcaatgttacattaccaatgc-tttatttgatata 92  Q
    |||||||||||| ||||| |||||||| |||  || ||||||||||||| |||  ||||| |||||||||||||    
T  73095 aatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University