View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_5 (Length: 464)
Name: NF10831_low_5
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 264 - 447
Target Start/End: Complemental strand, 2858296 - 2858113
Alignment:
| Q |
264 |
tttgtatgagagttaacaattttggattggaaaagagtaattttctttgtaaattgcatatgacattgcatttagatccttgggcttgttttctaagtaa |
363 |
Q |
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| T |
2858296 |
tttgtataggagtgaacaattttggattggaaaagagtaattttctttgtaaattgcatatgacattgcatttagatccttgggcttgttttctaagtaa |
2858197 |
T |
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| Q |
364 |
cagagtaaaattgggctatgttgaaagcccaattaacaatccctcttattaaggaattgcttctcacaccctttttgtgcttta |
447 |
Q |
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| T |
2858196 |
tagagtaaaattgggctatgttgaaagcccaattaacaatccctcttattaaggaattgcttctcacaccctctttgtgcttta |
2858113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 2858443 - 2858319
Alignment:
| Q |
11 |
gatgaattttggagttgaacgatgaaaaatggaaaacgacatcatatgaattgtttgtagatgaaaatatctcttctcctattaagttttgctcacttcc |
110 |
Q |
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| T |
2858443 |
gatgaattttggagttgaacgatgaaaaatggaaaacgaaatcatatgaattgtttgtagatgaaaatatctcttctcctattaagttttgctcattccc |
2858344 |
T |
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| Q |
111 |
acataaaaactcaagaatatccttg |
135 |
Q |
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| T |
2858343 |
acataaaaactcaagaatatccttg |
2858319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 36577156 - 36577095
Alignment:
| Q |
248 |
aaggtattttggttagtttgtatgagagttaacaattttggattggaaaagagtaattttct |
309 |
Q |
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| T |
36577156 |
aaggtattttcgttactttgtatgagagtcaacaattttggatgggagaagagcaattttct |
36577095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 36577156 - 36577114
Alignment:
| Q |
196 |
aaggtattttcgttaatttgtatgggagttaacaattttggat |
238 |
Q |
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| T |
36577156 |
aaggtattttcgttactttgtatgagagtcaacaattttggat |
36577114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 38402351 - 38402289
Alignment:
| Q |
243 |
tgtgaaaggtattttggttagtttgtatgagagttaacaattttggattggaaaagagtaatt |
305 |
Q |
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| T |
38402351 |
tgtgtaaggtattttcgtcagtttgtatgagagggagcaattttggatgggagaagagtaatt |
38402289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 33327580 - 33327547
Alignment:
| Q |
197 |
aggtattttcgttaatttgtatgggagttaacaa |
230 |
Q |
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| T |
33327580 |
aggtattttcgtcaatttgtatgggagttaacaa |
33327547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 31893903 - 31893959
Alignment:
| Q |
251 |
gtattttggttagtttgtatgagagttaacaattttggattggaaaagagtaatttt |
307 |
Q |
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| T |
31893903 |
gtatttttgtcagtttgtatgagagtgagcaattttggatgggagaagagcaatttt |
31893959 |
T |
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