View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_59 (Length: 238)

Name: NF10831_low_59
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_59
NF10831_low_59
[»] chr8 (4 HSPs)
chr8 (16-123)||(11023438-11023545)
chr8 (143-201)||(23519422-23519480)
chr8 (16-82)||(43737182-43737248)
chr8 (16-68)||(8475930-8475982)
[»] chr4 (6 HSPs)
chr4 (16-82)||(50962942-50963008)
chr4 (143-203)||(14166527-14166587)
chr4 (16-82)||(37495607-37495673)
chr4 (16-68)||(46593583-46593635)
chr4 (16-82)||(22502418-22502483)
chr4 (139-184)||(20706216-20706261)
[»] chr2 (2 HSPs)
chr2 (16-82)||(38506538-38506604)
chr2 (16-82)||(45637982-45638047)
[»] chr1 (2 HSPs)
chr1 (143-201)||(41489633-41489691)
chr1 (143-203)||(45434722-45434782)
[»] scaffold0744 (1 HSPs)
scaffold0744 (16-82)||(6437-6503)
[»] scaffold0071 (1 HSPs)
scaffold0071 (20-82)||(37654-37716)
[»] chr7 (2 HSPs)
chr7 (16-82)||(44263114-44263180)
chr7 (21-82)||(7929465-7929526)
[»] chr5 (1 HSPs)
chr5 (16-78)||(21722-21784)
[»] chr3 (2 HSPs)
chr3 (16-82)||(12932395-12932461)
chr3 (20-82)||(15424522-15424584)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 11023545 - 11023438
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttattgtagtatgatttgttagtatctttcagaattat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11023545 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttattgtagtatgatttgttagtatctttcagaattat 11023446  T
Q  116 gatatgtt 123  Q
    ||| ||||    
T  11023445 gatttgtt 11023438  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 23519422 - 23519480
Alignment:
Q  143 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcg 201  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||||| |||||||||||    
T  23519422 tatatggagcaaccacctgggtttgttgctcagggggagtcatctaccatggtttgtcg 23519480  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 43737182 - 43737248
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| |||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  43737182 acaagatggatgcatatgatatgtatgctccaccttgagggggagtgttgagatattgatatttatt 43737248  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 8475982 - 8475930
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgaga 68  Q
    |||||||||||||||||||| ||||||  |||| ||||| | |||||||||||    
T  8475982 acaagatggatgcatatgatgtatatgcaccaccttgagggggagtgttgaga 8475930  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 50962942 - 50963008
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| |||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  50962942 acaagatggatgcatatgatatgtatgctccaccttgagggggagtgttgagatattgatatttatt 50963008  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 14166587 - 14166527
Alignment:
Q  143 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcgac 203  Q
    |||||||||||| |||| |||||||||| |||||||||||| |||| |||||| |||||||    
T  14166587 tatatggagcaaccacctgggtttgttgctcagggggagtcatctaatatggtatgtcgac 14166527  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 37495607 - 37495673
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||| | |||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  37495607 acaagatggatgcatatgatttgtatgctccaccttgagggggagtgttgagatattgatatttatt 37495673  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 46593635 - 46593583
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgaga 68  Q
    |||||||||||||||||||||| |||| ||||| ||||| | |||||||||||    
T  46593635 acaagatggatgcatatgatatgtatgctccaccttgagggggagtgttgaga 46593583  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 22502483 - 22502418
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| |||| ||||| ||||| | | ||||||||| ||| |||||||||    
T  22502483 acaagatggatgcatatgatatgtatgctccaccttgag-gggggtgttgagatattgatatttatt 22502418  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 20706216 - 20706261
Alignment:
Q  139 agattatatggagcaatcacccgggtttgttgatcagggggagtct 184  Q
    |||||||||||||||| |||| || ||||||| |||||||||||||    
T  20706216 agattatatggagcaaccacctggatttgttgctcagggggagtct 20706261  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 38506538 - 38506604
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| |||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  38506538 acaagatggatgcatatgatatgtatgctccaccttgagggggagtgttgagatattgatatttatt 38506604  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 45637982 - 45638047
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    ||||||||||| ||||||||||||||| ||||| ||||| | | ||||||||| ||| |||||||||    
T  45637982 acaagatggattcatatgatatatatgctccaccttgag-gggggtgttgagagattgatatttatt 45638047  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 41489691 - 41489633
Alignment:
Q  143 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcg 201  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||||| |||||||||||    
T  41489691 tatatggagcaaccacctgggtttgttgctcagggggagtcatctaccatggtttgtcg 41489633  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 45434782 - 45434722
Alignment:
Q  143 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcgac 203  Q
    |||||||||||| |||| |||||||||| ||| |||||||| |||| |||||| |||||||    
T  45434782 tatatggagcaaccacctgggtttgttgctcaaggggagtcatctaatatggtatgtcgac 45434722  T

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Target: scaffold0744 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 6503 - 6437
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| |||| ||||| ||| | | ||||||||||| ||| |||||||||    
T  6503 acaagatggatgcatatgatatgtatgctccaccttgcgggggagtgttgagatattgatatttatt 6437  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37654 - 37716
Alignment:
Q  20 gatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||| |||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  37654 gatggatgcatatgatatgtatgctccaccttgagggggagtgttgagatattgatatttatt 37716  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 44263180 - 44263114
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| |||| ||||| ||||| | ||||||||| | ||| |||||||||    
T  44263180 acaagatggatgcatatgatatctatgctccaccttgagggggagtgttgatatattgatatttatt 44263114  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 7929465 - 7929526
Alignment:
Q  21 atggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    ||||||||||||||||| |||| ||||| ||||| | ||||||| ||| ||| |||||||||    
T  7929465 atggatgcatatgatatgtatgctccaccttgagggggagtgttaagatattgatatttatt 7929526  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 21722 - 21784
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatt 78  Q
    |||||||||||||||||||||| |||| ||||| ||||| | ||||||||||| ||| |||||    
T  21722 acaagatggatgcatatgatatgtatgctccaccttgagggggagtgttgagatattgatatt 21784  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 12932461 - 12932395
Alignment:
Q  16 acaagatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||||||| || | ||||| ||||| | ||||||||||| ||| |||||||||    
T  12932461 acaagatggatgcatatgatatgtacgctccaccttgagggggagtgttgagatattgatatttatt 12932395  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 15424584 - 15424522
Alignment:
Q  20 gatggatgcatatgatatatatgttccactttgagtgtgagtgttgagacattaatatttatt 82  Q
    |||||||||||||||||| |||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  15424584 gatggatgcatatgatatgtatgctccaccttgagggggagtgttgagatattgatatttatt 15424522  T

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