View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_6 (Length: 449)
Name: NF10831_low_6
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 7106047 - 7105606
Alignment:
| Q |
1 |
gaacagatgaaacacctttaagcctgagccatgcatgcattatctcatgagctaggattgatcctgtcaacaatctataaacataaaatccttgaattat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7106047 |
gaacagatgaaacacctttaagcctgagccatgcatgcataatctcatgagctaggattgatcctgtcaacaatctataaacataaaatccttgaattat |
7105948 |
T |
|
| Q |
101 |
atacagtgaaagtcatttgcaagcgcaagattgtgaaagtagatgttatatggttacctaggaaggccatataaaacaagaatggccgtcacttcgcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7105947 |
atacagtgaaagtcatttgcaagcgcaagattgtgaaagtagatgttatatggttacctaggaaggccatacaaaacaagaatggccgtcacttcgcatc |
7105848 |
T |
|
| Q |
201 |
gacgggtcagtctataaggtttggttatcatgtctgtgactcggtatcctgcccctataattggtcttcttaaaatctgggattacattaaataaccgtt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7105847 |
gacgggtcagtctataaggtttggttatcatgtctgtgactcggtatcctgcccctataattggtcttcttaaaatctggtattacattaaataaccgtt |
7105748 |
T |
|
| Q |
301 |
atgcaatacacaaatcttttacatccgaattaaaagtgtgtaaagatttgaatttggaagcaaggaatccctacggtggtgacagtttgttcttctgaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105747 |
atgcaatacacaaatcttttacatccgaattaaaagtgtgtaaagatttgaatttggaagcaaggaatccctacggtggtgacagtttgttcttctgaca |
7105648 |
T |
|
| Q |
401 |
agcagagccctctagtttcaggtaaatggtaatgaccctatg |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7105647 |
agcagagccctctagtttcaggtaaatggtaatgaccctatg |
7105606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 7093833 - 7093388
Alignment:
| Q |
1 |
gaacagatgaaacacctttaagcctgagccatgcatgcattatctcatgagctaggattgatcctgtcaacaatctataaacataaaatccttgaattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7093833 |
gaacagatgaaacacctttaagcctgagccatgcatgcataatctcatgagctaggattgatcctgtcaacaatctataaacataaaatccttgaattat |
7093734 |
T |
|
| Q |
101 |
atacagtgaaagtcatttgcaagcgcaagattgtgaaagtagatgttatatggttacctaggaaggccatataaaacaagaatggccgtcacttcgcatc |
200 |
Q |
| |
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|||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
7093733 |
atacgggaaaagtcatttgcaagcgctagattgtgaaagcagatgttatatggttacctaggaaggccatacaaaacaagaatggccgtcacttcgcatc |
7093634 |
T |
|
| Q |
201 |
gacgggtcagtctataaggtttggttatcatgtctgtgactcggtatcctgcccctataattggtcttcttaaaatctgggattacattaaat------a |
294 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||| | |
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| T |
7093633 |
gacgggtcagtctataaggcttggttatcatgtctgtgactcggtgtcctgcccctatacttggttttcttaaaatctggtattacattaaatatataaa |
7093534 |
T |
|
| Q |
295 |
accgttatgcaatacacaaatcttttacatccgaattaaaagtgtgtaaagatttgaatttggaagcaaggaatccctacggtggtgacagtttgttctt |
394 |
Q |
| |
|
|| ||||| |||||||||||| ||| ||| ||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||| |||||||| | |
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| T |
7093533 |
actgttatattatacacaaatctcttatatcagaattaaaagtttgaaaagattcgaatttggaagcaaggaatccctactgtggtgacggtttgttcct |
7093434 |
T |
|
| Q |
395 |
ctgacaagcagagccctctagtttcaggtaaatggtaatgacccta |
440 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
7093433 |
ctgacaagcagagtcctctagtttcaggtaaatggtgatgacccta |
7093388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 33406297 - 33406383
Alignment:
| Q |
14 |
acctttaagcctgagccatgcatgcattatctcatgagctaggattgatcctgtcaacaatctataaacataaaatccttgaattat |
100 |
Q |
| |
|
||||||||| || ||||| |||||||| || |||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
33406297 |
acctttaagtctaagccaagcatgcatcatttcatgagctaggattgatcctgtcaataacctataaatataaaatccttgaattat |
33406383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 33406622 - 33406755
Alignment:
| Q |
154 |
ttacctaggaaggccatataaaacaagaatggccgtcacttcgcatcgacgggtcagtctataaggtttggttatcatgtctgtgactcggtatcctgcc |
253 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||| |||||||| | || ||| |||| | |||||||| ||| |||| || || ||||| |
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| T |
33406622 |
ttacctaggaaggccatacaaaacaagtatggctgtcacttcacatcgacgtatgagcctaaaaggctcagttatcatatctatgacacgatagcctgct |
33406721 |
T |
|
| Q |
254 |
cctataattggtcttcttaaaatctgggattaca |
287 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||| |
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|
| T |
33406722 |
cctatacttggtctccttaaaatctggaattaca |
33406755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 33406840 - 33406904
Alignment:
| Q |
366 |
aatccctacggtggtgacagtttgttcttctgacaagcagagccctctagtttcaggtaaatggt |
430 |
Q |
| |
|
||||| ||| |||| ||||||||| |||||||||||||| || ||||| |||||||||||||||| |
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| T |
33406840 |
aatccttacagtggggacagtttgctcttctgacaagcaaagtcctctggtttcaggtaaatggt |
33406904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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