View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_61 (Length: 237)
Name: NF10831_low_61
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40276060 - 40275837
Alignment:
| Q |
1 |
aaccttgaacgtgtaaggcaaatcaagaatcgtttggtctcactttttggtcgcgtacagaaggtaaatatatagtcatcaaagatatcttgtgatcatt |
100 |
Q |
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| T |
40276060 |
aaccttgaaagtgtaaggcaaatcaagaatcgtttggtctcactttttggtcgcgtacaaaaggtaaataaatagtcatcaaagatatcttgtgatcatt |
40275961 |
T |
|
| Q |
101 |
tatttctccatatgtgttcactctttgtttgatctctcgtcatgtctcatcatctaatgcacccttttgtttacaattctaacttgtaatacctgataat |
200 |
Q |
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| T |
40275960 |
tatttctccatatgtgttcactctttgtttgatctcttgtcatgtctcatcatctaatgcacccttttgtttacaattctaacttgtaatacctgataat |
40275861 |
T |
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| Q |
201 |
gtatgtaaataaagcttggttttg |
224 |
Q |
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| T |
40275860 |
gtatgtaaataaagcttggttttg |
40275837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 39624624 - 39624558
Alignment:
| Q |
4 |
cttgaacgtgtaaggcaaatcaagaatcgtttggtctcactttttggtcgcgtacagaaggtaaata |
70 |
Q |
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||||||||||||||||| ||||||| |||| |||| |||||| |||||| ||||| |||||||||| |
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| T |
39624624 |
cttgaacgtgtaaggcagatcaagactcgtctggttgcactttctggtcgtgtacataaggtaaata |
39624558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 39634174 - 39634108
Alignment:
| Q |
4 |
cttgaacgtgtaaggcaaatcaagaatcgtttggtctcactttttggtcgcgtacagaaggtaaata |
70 |
Q |
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||||||||||||||||| ||||||| |||| |||| |||||| |||||| ||||| |||||||||| |
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| T |
39634174 |
cttgaacgtgtaaggcagatcaagactcgtctggttgcactttctggtcgtgtacataaggtaaata |
39634108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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