View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_62 (Length: 234)
Name: NF10831_low_62
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 38304274 - 38304472
Alignment:
| Q |
19 |
acgaacagatacaacgatggaggcaataacgatagtgagaagcaactgaaaggtgaggatggaataaaccttacgaatgaaggaccatcttaattcaggg |
118 |
Q |
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| T |
38304274 |
acgaacaaatacaacgatggaggtaataacgatagtgagaagcaactgaaaggtgaggatggaataaaccttacgaatgaaggacaatcttaattcaggg |
38304373 |
T |
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| Q |
119 |
ttttcaagcatcgtagggtaaaggattctttccccactctctacatctcttttttcagacatgtttcctacacaaggaggcaaagattctatgagccta |
217 |
Q |
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| T |
38304374 |
ttttcaagtatcgtagggtaaaggattctttccccactctccacatctctttttttagacatgtttcctacacaaggaggcaaagattctatgagccta |
38304472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 38314790 - 38314908
Alignment:
| Q |
53 |
gtgagaagcaactgaaaggtgaggatggaataaaccttacgaatgaaggaccatcttaattcagggttttcaagcatcgtagggtaaaggattctttccc |
152 |
Q |
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| T |
38314790 |
gtgagaagcaactgaaaagtgatgatggaataaaccttacgtatgaaggaccatcttagttcagggctctcaagcatcgtagggtaaagggttctttccc |
38314889 |
T |
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| Q |
153 |
cactctctacatctctttt |
171 |
Q |
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| T |
38314890 |
cactctccacatctctttt |
38314908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 38272671 - 38272790
Alignment:
| Q |
53 |
gtgagaagcaactgaaaggtgaggatggaataaaccttacgaatgaaggaccatcttaattcagggttttcaagcatcgtagggtaaaggattctttccc |
152 |
Q |
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| T |
38272671 |
gtgagaagcaactgaaaggtgaggatggagtataccttaagtatgaagggccatcttaattcagggctctcaagcaacgtagggtaaagggtacttcctc |
38272770 |
T |
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| Q |
153 |
cactctctacatctcttttt |
172 |
Q |
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| T |
38272771 |
cactctcgatatctcctttt |
38272790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 38276388 - 38276474
Alignment:
| Q |
56 |
agaagcaactgaaaggtgaggatggaataaaccttacgaatgaaggaccatcttaattcagggttttcaagcatcgtagggtaaagg |
142 |
Q |
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| T |
38276388 |
agaagcaactgaattgtgatgatggagtataccttacgtatgaaggaccatcttaattcagggctctcaagcatcgtagggtaaagg |
38276474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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