View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_66 (Length: 229)

Name: NF10831_low_66
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_66
NF10831_low_66
[»] chr6 (4 HSPs)
chr6 (1-223)||(587159-587378)
chr6 (138-172)||(31434440-31434474)
chr6 (138-171)||(1008051-1008084)
chr6 (138-171)||(5258147-5258180)
[»] chr8 (1 HSPs)
chr8 (138-171)||(21121395-21121428)
[»] chr7 (1 HSPs)
chr7 (138-171)||(40630684-40630717)
[»] chr4 (2 HSPs)
chr4 (138-171)||(29399054-29399087)
chr4 (138-171)||(32633405-32633438)
[»] chr1 (5 HSPs)
chr1 (138-171)||(4001454-4001487)
chr1 (138-171)||(4318844-4318877)
chr1 (138-171)||(7133301-7133334)
chr1 (138-171)||(37311754-37311787)
chr1 (138-171)||(41165532-41165565)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 587378 - 587159
Alignment:
Q  1 ccatataccgcaagcggacaatattctcgaaagacatgcaacatattttcaacatctccacaatgataacaataaggatgtccaatccgcatatagttca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  587378 ccatataccgcaagcggacaacattctcgaaagacatgcaatatattttcaacatctcaacaatgataacaataaggatgtccaattggcatatagttca 587279  T
Q  101 gcctgcaattcgtcatgagacggtcatgatgaagcaaccacttagtgggaaaagtcttggttgttgttgtttgaattaaatctaacttctaggaaccaca 200  Q
      |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||   ||||||||| |||||||    
T  587278 atctgcaattcgtcatgagacggtcatgatgaagcagccacttagtggaaaaagtcttggttgttgttatttgaattaaa---aacttctagaaaccaca 587182  T
Q  201 atttatattgaccagaaattctc 223  Q
    |||||||||||||||||||||||    
T  587181 atttatattgaccagaaattctc 587159  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 31434474 - 31434440
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgttt 172  Q
    ||||||||||||| |||||||||||||||||||||    
T  31434474 ccacttagtgggataagtcttggttgttgttgttt 31434440  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 1008084 - 1008051
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  1008084 ccacttagtgggaaaaggcttggttgttgttgtt 1008051  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 5258180 - 5258147
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||| ||||||||||||||||||||    
T  5258180 ccacttagtgggataagtcttggttgttgttgtt 5258147  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 21121395 - 21121428
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  21121395 ccacttagtgggaaaaggcttggttgttgttgtt 21121428  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 40630684 - 40630717
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  40630684 ccacttagtgggaaaaggcttggttgttgttgtt 40630717  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 29399054 - 29399087
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  29399054 ccacttagtgggaaaaggcttggttgttgttgtt 29399087  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 32633438 - 32633405
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  32633438 ccacttagtgggaaaaggcttggttgttgttgtt 32633405  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 4001487 - 4001454
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  4001487 ccacttagtgggaaaaggcttggttgttgttgtt 4001454  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 4318877 - 4318844
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  4318877 ccacttagtgggaaaaggcttggttgttgttgtt 4318844  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 7133334 - 7133301
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  7133334 ccacttagtgggaaaaggcttggttgttgttgtt 7133301  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 37311787 - 37311754
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  37311787 ccacttagtgggaaaaggcttggttgttgttgtt 37311754  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 41165532 - 41165565
Alignment:
Q  138 ccacttagtgggaaaagtcttggttgttgttgtt 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  41165532 ccacttagtgggaaaaggcttggttgttgttgtt 41165565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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