View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10831_low_68 (Length: 227)

Name: NF10831_low_68
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10831_low_68
NF10831_low_68
[»] chr8 (3 HSPs)
chr8 (1-227)||(40276475-40276701)
chr8 (1-227)||(39625195-39625421)
chr8 (1-227)||(39634745-39634971)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40276701 - 40276475
Alignment:
Q  1 atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40276701 atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct 40276602  T
Q  101 tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40276601 tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt 40276502  T
Q  201 tctttcttcgtttccttcaagatcttc 227  Q
    |||||||||||||||||||||||||||    
T  40276501 tctttcttcgtttccttcaagatcttc 40276475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39625421 - 39625195
Alignment:
Q  1 atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct 100  Q
    |||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||||||   ||||| |||| || ||| | ||||||    
T  39625421 atcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttct 39625322  T
Q  101 tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt 200  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| |   ||||||    
T  39625321 tctatcttaggacgagaaaaagccattattgttaacttagaacacattagagcgattatcacttcgaatgaagtgcttatgattaattcaattgaccctt 39625222  T
Q  201 tctttcttcgtttccttcaagatcttc 227  Q
    ||||| |||| || |||||||||||||    
T  39625221 tctttattcgctttcttcaagatcttc 39625195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39634971 - 39634745
Alignment:
Q  1 atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct 100  Q
    |||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||||||   ||||| |||| || ||| | ||||||    
T  39634971 atcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttct 39634872  T
Q  101 tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt 200  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| |   ||||||    
T  39634871 tctatcttaggacgagaaaaagccattattgttaacttagaacacattagagcgattatcacttcgaatgaagtgcttatgattaattcaattgaccctt 39634772  T
Q  201 tctttcttcgtttccttcaagatcttc 227  Q
    ||||| |||| || |||||||||||||    
T  39634771 tctttattcgctttcttcaagatcttc 39634745  T

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