View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_7 (Length: 405)
Name: NF10831_low_7
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 11940481 - 11940274
Alignment:
| Q |
1 |
ttgtgaaagttaagatggaggcagggtcattcctatcattttataggacttagagagagtttgagaaaaggacccattaaataatacttcataactttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11940481 |
ttgtgaaagttaagatggaggcagggtcattcctatcattttataggacttaggcagagtttgagaaaaggacccattaaataatacttcataattttca |
11940382 |
T |
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| Q |
101 |
cgtgataaacgatgaatgcaacccgcattaattaagggggttaacatctcaacgtgaatgaataatctccattgaaattctctccatttttcttgactgt |
200 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
11940381 |
cgtgataaacgatgaatgaaacccacattaattaagggggttaacttctcaacgtgaatgaataatctccattggaattctctccatttttcttgactat |
11940282 |
T |
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| Q |
201 |
tgcatctc |
208 |
Q |
| |
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|||||||| |
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| T |
11940281 |
tgcatctc |
11940274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 204 - 391
Target Start/End: Complemental strand, 11940235 - 11940049
Alignment:
| Q |
204 |
atctctccttttatccctaatgtttgatggtttagatgcaacaattgagnnnnnnntgagagaattccaatggagggaatttattccctttctcaactat |
303 |
Q |
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| T |
11940235 |
atctctccttttatccctaatgtttgatggtttagatgcaacaattgagaaaaaag-gaaagaattccaatggagggaatctattccctttctcaactat |
11940137 |
T |
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| Q |
304 |
gttgacaccccaaattaccatgataaaatgttttaaaatctcaattatactgacatcccaaaccaccatgttctaaatgcacctcatc |
391 |
Q |
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| T |
11940136 |
gttggcaccccagattaccatgataaaatgttttaaaatctcaattatgctgacatcccaaaccaccatgtgctaaatgcacctcatc |
11940049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 5760837 - 5760909
Alignment:
| Q |
293 |
ttctcaactatgttgacaccccaaattaccatgataaaatgttttaaaatctcaattatactgacatcccaaa |
365 |
Q |
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| T |
5760837 |
ttctcaactatgttggcaccccaaatttccatgataaaaagttttgaaatctcaactatgctgacatcccaaa |
5760909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 5760721 - 5760785
Alignment:
| Q |
30 |
ttcctatcattttataggacttagagagagtttgagaaaaggacccattaaataatacttcataa |
94 |
Q |
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| T |
5760721 |
ttcctatcattttattggtcttaggccgagcttgagaaaatgaccccttaaataatacttcataa |
5760785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 10298513 - 10298448
Alignment:
| Q |
296 |
tcaactatgttgacaccccaaattaccatgataaaatgttttaaaatctcaattatactgacatcc |
361 |
Q |
| |
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| T |
10298513 |
tcaactatgttggcaccccaagttaccataataaaatgttttgaaatcccaattatgatgacatcc |
10298448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 3096015 - 3096061
Alignment:
| Q |
107 |
aaacgatgaatgcaacccgcattaattaagggggttaacatctcaac |
153 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||| |||||||||| |
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| T |
3096015 |
aaacgatgaatgcaacacgcattaattatggtggttgacatctcaac |
3096061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 3096413 - 3096342
Alignment:
| Q |
293 |
ttctcaactatgttgacaccccaaattaccatgataaaatgttttaaaatctcaattatactgacatcccaaa |
365 |
Q |
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|||| |||||| ||| ||||||| ||||||| |||||||||||| ||||||||| ||| ||| ||||||||| |
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| T |
3096413 |
ttctaaactatattgttaccccaagttaccataataaaatgttttgaaatctcaactatgctg-catcccaaa |
3096342 |
T |
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