View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_73 (Length: 214)
Name: NF10831_low_73
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_73 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 49011629 - 49011418
Alignment:
| Q |
1 |
tatcatgtgtatgccgtattaattcaagacatcaaagacattctagccactaaagatttctcaattcaacattgttttagagaagggaatcaatgcgctg |
100 |
Q |
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| T |
49011629 |
tatcatgtgtatgccgtattaattcaagacatcaaagacattctagccactacagatttctcaattcaacattgttttagagaagggaatcaatgcgctg |
49011530 |
T |
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| Q |
101 |
acttcatggcgaagctaggagcaaactctaatgcagattacattactcacaacactcctcctcatgaccttctccctttaatcaggaccgacgccatggg |
200 |
Q |
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| T |
49011529 |
acttcatggcgaagctaggagcaaactctaatgcagattacatttctcacaacactcctcctcatgaccttctccctttaatcaggacagacgccatggg |
49011430 |
T |
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| Q |
201 |
aaccttgtttcc |
212 |
Q |
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|||||||||||| |
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| T |
49011429 |
aaccttgtttcc |
49011418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 29100827 - 29101041
Alignment:
| Q |
1 |
tatcatgtgtatgccgtattaattcaagacatcaaagacattctagccactaaagatttctcaattcaacattgttttagagaagggaatcaatgcgctg |
100 |
Q |
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| T |
29100827 |
tatcatgtgtatactgttttaattcaagacatcaaagacattctagccactacagatctctcaattcaacattgttttagagaagggaatcaatgtgctg |
29100926 |
T |
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| Q |
101 |
acttcatggcgaagctaggagcaaactctaatgcagattacattactcacaacactcctcctcatgaccttctccc-tttaatcaggaccgacgccatgg |
199 |
Q |
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| T |
29100927 |
acttcatggcgaagctaggagcaaactctaatgcaaattacttttctcacaccactcctcgtcatgaccttctcccttttgatcaggatcgacgccatgg |
29101026 |
T |
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| Q |
200 |
gaaccttgtttccta |
214 |
Q |
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| T |
29101027 |
gaaccttgtttccta |
29101041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 24530982 - 24531118
Alignment:
| Q |
1 |
tatcatgtgtatgccgtattaattcaagacatcaaagacattctagccactaaagatttctcaattcaacattgttttagagaagggaatcaatgcgctg |
100 |
Q |
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||||||| ||||| || ||||| ||||| |||||||||||| || | || | | | ||||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
24530982 |
tatcatgcttatgctgttttaatccaagatatcaaagacattttatcgacaacaaacttctccattcatcattgttttagagaagggaaccaatgtgctg |
24531081 |
T |
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| Q |
101 |
acttcatggcgaagctaggagcaaactctaatgcaga |
137 |
Q |
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| T |
24531082 |
acctcatggcaaagctaggagccacctctaatgcaga |
24531118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 54089372 - 54089274
Alignment:
| Q |
114 |
gctaggagcaaactctaatgcagattacattactcacaacactcctcctcatgaccttctccctttaatcaggaccgacgccatgggaaccttgtttcc |
212 |
Q |
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| T |
54089372 |
gctaggagcaaactctaatgcagactacttttctcacaccactcctcctcatgaccttctccctttgatcaggatcgacgccatgggaaccttgtttcc |
54089274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 54475467 - 54475391
Alignment:
| Q |
56 |
atttctcaattcaacattgttttagagaagggaatcaatgcgctgacttcatggcgaagctaggagcaaactctaat |
132 |
Q |
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| T |
54475467 |
atttctccattcatcattgtcttagagaagggaatcaatgtgccgacttcctggcaaagttaggagcaaactctaat |
54475391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 28323841 - 28323913
Alignment:
| Q |
56 |
atttctcaattcaacattgttttagagaagggaatcaatgcgctgacttcatggcgaagctaggagcaaactc |
128 |
Q |
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| T |
28323841 |
atttctccattcatcattgtcttcgtgaagggaaccaatgtactgactacatggcgaagttaggagcaaactc |
28323913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 22486869 - 22486763
Alignment:
| Q |
10 |
tatgccgtattaattcaagacatcaaagacattctagccactaaagatttctcaattcaacattgttttagagaagggaatcaatgcgctgacttcatgg |
109 |
Q |
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||||| || |||||||||||||||||||||||| | |||||| | ||||||| ||||| |||||||| || |||||||| ||||| || |||||||||| |
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| T |
22486869 |
tatgctgtgttaattcaagacatcaaagacattttgtccactacaaatttctccattcatcattgtttaagggaagggaaccaatgtgcggacttcatgg |
22486770 |
T |
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| Q |
110 |
cgaagct |
116 |
Q |
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| T |
22486769 |
ctaagct |
22486763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 7819256 - 7819312
Alignment:
| Q |
82 |
gaagggaatcaatgcgctgacttcatggcgaagctaggagcaaactctaatgcagat |
138 |
Q |
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| T |
7819256 |
gaaggaaatcaatgcgccgacttcatggcgaagcttggggccaactccaatgaagat |
7819312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 26430737 - 26430682
Alignment:
| Q |
70 |
cattgttttagagaagggaatcaatgcgctgacttcatggcgaagctaggagcaaa |
125 |
Q |
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| T |
26430737 |
cattgtcttcgagaagggaatcaatgtgctgatttcatggcaaagctaggtgcaaa |
26430682 |
T |
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