View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10831_low_78 (Length: 201)
Name: NF10831_low_78
Description: NF10831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10831_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 32314166 - 32313990
Alignment:
| Q |
14 |
cagagaagttgagtgcaagtccaagacggattggatgtgttgatggaagatctgtgcttgcagtggctgaagcagcctaataatagaaatagaaatatca |
113 |
Q |
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| T |
32314166 |
cagagaagttgagtgcaagtccaagacggattggatgtgttgatggaagatctgtgcttgcagtggcggaagcagcctaataatagaaatagaaatatca |
32314067 |
T |
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| Q |
114 |
tgtat------aatnnnnnnnnctccatatagatttaaacacaagaaattatatgtgaatcagttcagtggtgaaat |
184 |
Q |
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| T |
32314066 |
tgtatattaaaaaaaacaacaccaccatatagatttaaacacaagaaattatatgtgaatcagttcagtggtgaaat |
32313990 |
T |
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Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 19415885 - 19415802
Alignment:
| Q |
14 |
cagagaagttgagtgcaagtccaagacggattggatgtgttgatggaagatctgtgcttgcagtggctgaagcagcctaataat |
97 |
Q |
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| T |
19415885 |
cagagaagttgagtgcaagtccaagacggattggatgtgttgatggaagatcagtgtttgcagtggcggaagcagcctaataat |
19415802 |
T |
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