View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10832_low_2 (Length: 398)
Name: NF10832_low_2
Description: NF10832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10832_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 7723496 - 7723877
Alignment:
| Q |
1 |
cgtgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgag |
100 |
Q |
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| T |
7723496 |
cgtgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgag |
7723595 |
T |
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| Q |
101 |
gcccaaaggtnnnnnnnntactctaaatatatacattccaaatatataactttatttcaatcttttgatagtttcaatttgaatgggaattacagtcact |
200 |
Q |
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| T |
7723596 |
gcccaaaggtaaaaaaaatactctaaatata-atataacta-tatataactttatttcaatcttttgatagtttcaatttgaatgg-aattacagtcatt |
7723692 |
T |
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| Q |
201 |
atgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaacttctgccgccggcacagcgacagcgccatctattggcgtaatggagtcagct |
300 |
Q |
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| T |
7723693 |
atgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaacttctgccgctggcacagcgacagcgccatctattggcgtaatggagtcagct |
7723792 |
T |
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| Q |
301 |
tcgatgtataaccaccaccaccatc---acaacaacaacaactcatggtacgtacaaccacagaaccagaagatgcagtgtttct |
382 |
Q |
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| T |
7723793 |
tcgatgtataaccaccaccaccatcacaacaacaacaacaactcatggtacgtacaaccacagaaccagaagatgcagtgtttct |
7723877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 32956086 - 32956020
Alignment:
| Q |
179 |
ttgaatgggaattacagtcactatgcaatgcatgtgggatcagattcaagaaggaagagagaagagc |
245 |
Q |
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| T |
32956086 |
ttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagc |
32956020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 32956410 - 32956322
Alignment:
| Q |
22 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggt |
110 |
Q |
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| T |
32956410 |
aacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggt |
32956322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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