View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10833_10 (Length: 316)
Name: NF10833_10
Description: NF10833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10833_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 45115581 - 45115708
Alignment:
| Q |
20 |
gtacatgaaaagataaaattaaaatatatatcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45115581 |
gtacatgaaaagataaaattaaaatatatgtcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcat |
45115680 |
T |
|
| Q |
120 |
attatacataggattagatctttgattg |
147 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
45115681 |
attatacataggattaaatctttgattg |
45115708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 45115761 - 45115864
Alignment:
| Q |
200 |
ctcaaattcctttcctatgatgtaactgcatcttccatgatcaagcatatgatagaaagatgttattgtatactttgaaactaaactttaggaaatcacc |
299 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45115761 |
ctcaaattcctttcttatgatgtaactgcatcttccatgatcaagcatatgatagaaagatgttattgtatgctttgaaactaaactttaggaaatcacc |
45115860 |
T |
|
| Q |
300 |
atat |
303 |
Q |
| |
|
|||| |
|
|
| T |
45115861 |
atat |
45115864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 2988795 - 2988670
Alignment:
| Q |
22 |
acatgaaaagataaaattaaaatatatatcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcatat |
121 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2988795 |
acatgaaaagataaaattaaaatatatgtcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcatat |
2988696 |
T |
|
| Q |
122 |
tatacataggattagatctttgattg |
147 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
2988695 |
tatacataggattaaatctttgattg |
2988670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 2988617 - 2988514
Alignment:
| Q |
200 |
ctcaaattcctttcctatgatgtaactgcatcttccatgatcaagcatatgatagaaagatgttattgtatactttgaaactaaactttaggaaatcacc |
299 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2988617 |
ctcaaattcctttcttatgatgtaactgcatcttccatgatcaagcatatgatagaaagatgttattgtatgctttgaaactaaactttaggaaatcacc |
2988518 |
T |
|
| Q |
300 |
atat |
303 |
Q |
| |
|
|||| |
|
|
| T |
2988517 |
atat |
2988514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 26723875 - 26723772
Alignment:
| Q |
200 |
ctcaaattcctttcctatgatgtaactgcatcttccatgatcaagcatatgatagaaagatgttattgtatactttgaaactaaactttaggaaatcacc |
299 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26723875 |
ctcaaattcttttcttatgatgtaactgcatcttccatgatcaagcatatgatagaaagatgttattgtatgctttgaaactaaactttaggaaatcacc |
26723776 |
T |
|
| Q |
300 |
atat |
303 |
Q |
| |
|
|||| |
|
|
| T |
26723775 |
atat |
26723772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 26724020 - 26723917
Alignment:
| Q |
44 |
tatatatcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcatattatacataggattagatctttg |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26724020 |
tatatgtcaatgcaaccgtgattactgagcgtttcctatagatcatgtattatggctttgtatatagaatatgcatattatacataggattaaatctttg |
26723921 |
T |
|
| Q |
144 |
attg |
147 |
Q |
| |
|
|||| |
|
|
| T |
26723920 |
attg |
26723917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University