View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10833_11 (Length: 301)
Name: NF10833_11
Description: NF10833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10833_11 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 4219543 - 4219289
Alignment:
| Q |
1 |
aaataacggtgtcacaaaagtttgtccaataaaataaaaatttatgtactatttcaccttaaataacaaatttagagttttatttggcttagttttatta |
100 |
Q |
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| T |
4219543 |
aaataacggtgtcacaaaagtttgtccaataaaataaaaatttatgtactatctcatcttaaataacaaatttagagttttatttggcttagttttatta |
4219444 |
T |
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| Q |
101 |
atccaagttcatttataaacttaaaaattgctaaatagaacaaaatgagcaaccagtttcctttaacatttcatgtttatagacatccttcttacttaaa |
200 |
Q |
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| T |
4219443 |
atccaagttcatttataaacttaacaattgctaaatagaacaaaatgagcaaccagtttcctttaacatttcatgtttatagatatccttcttaattaaa |
4219344 |
T |
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| Q |
201 |
taatttttaagaaacagctactaagatgggaaataaaaataaacaaaatcgtgtt |
255 |
Q |
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| T |
4219343 |
taatttttaagaaacagctactaagatggaaaataaaaataaacaaaatcgtgtt |
4219289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 39721470 - 39721608
Alignment:
| Q |
9 |
gtgtcacaaaagtttgtccaataaaataaaaatttatgtactatttcaccttaaataacaaatttag-agttttatttggcttagttttattaatccaag |
107 |
Q |
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| T |
39721470 |
gtgtcataaaaatttgtccaataaaataaaaat---tgtaccatttcacccaaagtaacaatgttagtagttttatttgggctatttttattagttcaag |
39721566 |
T |
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| Q |
108 |
ttcatttataaacttaaaaattgctaaatagaacaaaatgag |
149 |
Q |
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| T |
39721567 |
ttcatttgtaaccctaacaattgttaattggaataaaatgag |
39721608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 47350538 - 47350635
Alignment:
| Q |
90 |
tagttttattaatccaagttcatttataaacttaaaaattgctaaatagaacaaaatgagcaaccagtttcctttaacatttcatgtttatagacatc |
187 |
Q |
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|||||||||||||| |||||||||| ||| | ||| ||||||||| | ||||||||| || ||| || ||||||||||||| |||||| ||||| |
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| T |
47350538 |
tagttttattaatctaagttcatttgtaaccctaataattgctaattggaacaaaataagtcgtcagatttctttaacatttcagttttataaacatc |
47350635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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