View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10833_7 (Length: 342)
Name: NF10833_7
Description: NF10833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10833_7 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 38556717 - 38556419
Alignment:
| Q |
13 |
aatattacaaagactgatcatcggttgttattttccatcaccactcatccttatattctaacaaacatataaaaaaggatttctttccgaa-tttcattt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38556717 |
aatattacaaagactgatcatcggttgttattttccatcaccactcatccttatattctaacaaacatataaaaaaggatttctttccgaaatttcattt |
38556618 |
T |
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| Q |
112 |
gtaaacactttaatgcacannnnnnnnn-aactaataccatatagtagtatagcatactcagcttcagagaagattcaaatgctccaaaaattacggtat |
210 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38556617 |
gtaaacactttaatgcacattttttttttaactaataccatatagtagtatagcatactcagcttcagagaagattcaaatgctccaaaaattacagtat |
38556518 |
T |
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| Q |
211 |
ggtaccactctatatatatcattatcacatggatccattcattcaatcaactagcttttatttatttattagatgaagagatgagtcctatctgggagag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38556517 |
ggtaccactctatatatatcattatcacatggatccattcatttaatcaactagcttttatt----tattagatgaagagatgagtcctatctgggagag |
38556422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 38548486 - 38548317
Alignment:
| Q |
141 |
actaataccatatagtagtatagcatactcagcttcagagaagattcaaatgctccaaaaattacggtatggtaccactctatatatatcattatcacat |
240 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||| | ||| || ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
38548486 |
actaataccatatagtagtatagcatacacagcgtcagagaagattgacgtgcacc-caaattacaatatgttaccactctatatatatcattatcacat |
38548388 |
T |
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| Q |
241 |
ggatccattcattcaatcaactagcttttatttatttattagatgaagagatgagtcctatctgggagagatgtg |
315 |
Q |
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||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38548387 |
ggatccattcaattaatcaactagct----tttatttattagatgaagagatgagtcctatctgggagagatgtg |
38548317 |
T |
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