View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10833_low_1 (Length: 245)
Name: NF10833_low_1
Description: NF10833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10833_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 45115581 - 45115708
Alignment:
| Q |
37 |
gtacatgaaaagataaaattaaaatatatatcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcat |
136 |
Q |
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| T |
45115581 |
gtacatgaaaagataaaattaaaatatatgtcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcat |
45115680 |
T |
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| Q |
137 |
attatacataggattaaatctttgattg |
164 |
Q |
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| T |
45115681 |
attatacataggattaaatctttgattg |
45115708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 2988795 - 2988670
Alignment:
| Q |
39 |
acatgaaaagataaaattaaaatatatatcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcatat |
138 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2988795 |
acatgaaaagataaaattaaaatatatgtcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcatat |
2988696 |
T |
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| Q |
139 |
tatacataggattaaatctttgattg |
164 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2988695 |
tatacataggattaaatctttgattg |
2988670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 26724020 - 26723917
Alignment:
| Q |
61 |
tatatatcaatgcaaccgtgattactgagcatttcctatagatcatgtattatggctttgtatatagaatatgcatattatacataggattaaatctttg |
160 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26724020 |
tatatgtcaatgcaaccgtgattactgagcgtttcctatagatcatgtattatggctttgtatatagaatatgcatattatacataggattaaatctttg |
26723921 |
T |
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| Q |
161 |
attg |
164 |
Q |
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|||| |
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| T |
26723920 |
attg |
26723917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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